Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N04
         (836 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.98 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   1.7  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   1.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   4.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   6.9  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   9.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.1  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 194 LEPGPTVRFHAAHRSSRAHVVYPHAGLVYD--TQAPRVRRMP 75
           + PG T R+H    +S  H  + H+G      T  P + R+P
Sbjct: 157 IHPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFGPFIVRVP 198


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 212 PLAGSELEPGPTVRFHAAHRSSRAHVVYPHAGLV 111
           P+ G    P   +  + AH    +H +YP + L+
Sbjct: 326 PVPGHSTSPNLPLTHNIAHNPYPSHSIYPSSNLM 359


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 610 PSSKIFPVFSLSSSGSRQMLAAAYNKPRP 524
           P S++FP F  +  GS   +A   + P P
Sbjct: 12  PDSELFPGFGSTCGGSSSSMAYLKSAPYP 40



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 683 GPGLHGAPLXTVH 645
           G GLHG P+ ++H
Sbjct: 43  GLGLHGLPVDSLH 55


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 358 IASSTWPARVMTQ 396
           +AS TWPAR + Q
Sbjct: 277 VASRTWPARPVNQ 289


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 226 P*CGFHLPAVSL 191
           P CG HLP +SL
Sbjct: 700 PRCGNHLPPISL 711


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 583 SLSSSGSRQMLAAAYNKPRPSELPV 509
           S  + G    LAAA   P P+ LP+
Sbjct: 28  SPEAGGGGFWLAAASGAPHPAALPI 52


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 583 SLSSSGSRQMLAAAYNKPRPSELPV 509
           S  + G    LAAA   P P+ LP+
Sbjct: 28  SPEAGGGGFWLAAASGAPHPAALPI 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,640
Number of Sequences: 336
Number of extensions: 4667
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)