Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N01
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    29   0.073
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    29   0.073
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.90 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   8.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 0.073
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 11  IGTCCVYVVFVSENIHFVLVKRFNVEITVFQVMLCILLPLILIN 142
           +G CCV  +F +          F V + +F +++   +P+++I+
Sbjct: 73  VGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVIS 116


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 0.073
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 11  IGTCCVYVVFVSENIHFVLVKRFNVEITVFQVMLCILLPLILIN 142
           +G CCV  +F +          F V + +F +++   +P+++I+
Sbjct: 73  VGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVIS 116


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 740 LFGALCLSALGLXFPAFIQSCTYWYYVSRSERIRMII 850
           L G  CL+ + L F +FI S    +++++   IRM I
Sbjct: 382 LLGIQCLTVVCLAFWSFIVSTILLWFINKIIPIRMSI 418


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 413 SWLDSRLRTCRRMTSVFSFRSPTVESHQWLPE 318
           +W D+RLR    MTS +         + W P+
Sbjct: 91  TWKDNRLRLPENMTSEYRLLEVDWLKNMWRPD 122


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 369 GVFISFSNGRITPMASRANRTVPKNRGKSASRPTGSLPSKVGVSLN 232
           GV +S +   ITP  +R+N  V  N   +  R      + V V +N
Sbjct: 260 GVRLSSARAFITPFENRSNLHVIVNATVTKVRTLNKRATGVNVLIN 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,038
Number of Sequences: 438
Number of extensions: 5901
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)