Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M24
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    29   0.87 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    28   1.5  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    28   2.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   3.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   4.7  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 495 WRLVAEYFSLQRSCISCLKWTKTLNCCKRQERSPMCQCS 611
           W+L  EYF+    CI  ++   T+NC    E   +C CS
Sbjct: 83  WQLEEEYFT----CIKTIELEATVNCLCVNENLVVCGCS 117


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = -1

Query: 625 YQTGKEHWHIGDLSCLLQQFNVFVHFRQEMHERCSEKYSATKRQQSHHQLIRRPQ----V 458
           Y+T  EHW+    +       +FV    +      E Y     +Q    +IR+ Q     
Sbjct: 555 YKTANEHWNSTIQAIACNVLQIFVDMDADFFNGLVEDYKQAIIKQEEVMIIRKQQWCQIE 614

Query: 457 GIAGFREPVEFLR 419
            +A   +P ++LR
Sbjct: 615 ALAAENKPTDYLR 627


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/54 (20%), Positives = 26/54 (48%)
 Frame = -1

Query: 631 AHYQTGKEHWHIGDLSCLLQQFNVFVHFRQEMHERCSEKYSATKRQQSHHQLIR 470
           A ++  K HW+    S +     +F+     + +    +YS ++R++   ++IR
Sbjct: 452 ALFEISKSHWNRVIHSMVCNVLKLFMDINPSLFDEVDAEYSESRRKKEDEEIIR 505


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 533  MHLLPEVDENIELLQETGEI-PDVPVFLAGLIMC 631
            + LLP+ ++ I++LQE G I  +  V L G + C
Sbjct: 1014 LELLPDYEQRIKVLQELGYIDAERTVLLKGRVAC 1047


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 669 TNSSTKYIMKNPPHIIKPARNTGTSGISPVSCNNSMFSSTSGRRCMNVVAKSTPPPNANS 490
           ++   K I   P    KP+ +T T+G S  S  +S   +T     +  + K  P P + S
Sbjct: 258 SHGPAKQISVQPSEHPKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGS 317

Query: 489 P 487
           P
Sbjct: 318 P 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,654,704
Number of Sequences: 5004
Number of extensions: 77945
Number of successful extensions: 255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)