Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M24
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1070 - 25814741-25815850 30 2.1
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 30 2.8
03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314... 30 2.8
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 30 2.8
08_02_0707 - 20212190-20214592 29 3.7
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819... 29 4.9
12_02_0389 - 18499372-18499606,18499713-18499882 29 6.5
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 29 6.5
06_03_0525 - 21742288-21742605,21743348-21743542,21743553-217437... 28 8.6
05_06_0003 + 24797098-24797223,24797981-24798193,24798289-247984... 28 8.6
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 28 8.6
>12_02_1070 - 25814741-25815850
Length = 369
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 221 ASILRSCTCSVGGLRREVSVFTVQRLPHPSNQNA 120
A +L CS+ G R+ VSVF + RL PS+ ++
Sbjct: 305 APVLNVPVCSLRGSRKSVSVFGIDRLFSPSSSSS 338
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 391 VRGVFAVVDIEEIQLVHEIPRSQPAVFESAGDGTVGVWWRSTFRYNVHAS 540
V G V D+++ RS E A GTVG +W ST + N H S
Sbjct: 384 VLGALTVDDLKQSSATSSPRRSPSHNREEAILGTVGSYWSSTKQDNAHCS 433
>03_06_0233 +
32530174-32530492,32531081-32531127,32531277-32531413,
32531673-32531841,32532598-32532885,32533021-32533107,
32533454-32534152,32534244-32534735
Length = 745
Score = 29.9 bits (64), Expect = 2.8
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 519 KSTPPPNANSPITS*FEDRRLGSRDFVNQLNFFDINNGKHPTNM-DMPNKDTIVTILAVK 343
KSTPP + N P E + GS+ + + GK+PT D + +L K
Sbjct: 102 KSTPPGSNNEPNQGLPESTQTGSKPILEK--------GKNPTGASDNKALSEVEHLLMRK 153
Query: 342 TFSTAMVFFCLSFL 301
TF T VFF L FL
Sbjct: 154 TF-TRKVFFILIFL 166
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 29.9 bits (64), Expect = 2.8
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = -2
Query: 654 KYIMKNPPHIIKPARNTGTSGIS----PVSCNNSMFSSTSGRRC---MNVVAKSTPPPNA 496
K + KNP H R+ GT+GI+ + + +S +N+ AKS P
Sbjct: 210 KTVQKNPEH--GDLRSNGTNGINCGQRRKAFKEKLQDKSSAETLTFRLNIPAKSAPSSGF 267
Query: 495 NSPITS*FEDRRLGSRDFVN 436
+SP+ S RRL S DF++
Sbjct: 268 SSPVQS---PRRLSSVDFLS 284
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 649 HHEESSAHYQTGKEHWHIGDLSCLLQQFNVFVHFRQEMHERCSEKYSATKRQQS 488
HH + S H+Q +H H D+S + + +H CSE +S QS
Sbjct: 589 HHHDHSEHHQQSGDHAH-QDISNISSDPAILEIPLNSIHTHCSEAHSCNGGLQS 641
>07_01_1111 +
10279778-10280065,10280265-10280340,10280734-10281944,
10283779-10284138
Length = 644
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 610 EHWHIGDLSCLLQQFNVFVHFRQEMHERCSEKYSATKRQQSHHQL 476
EHW+ S L +F E+++ C KY K ++ H+L
Sbjct: 564 EHWNQAVKSLSLNVQKLFSDRDPELYKECLRKYEENKAKEKDHKL 608
>12_02_0389 - 18499372-18499606,18499713-18499882
Length = 134
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 743 SISGNDPXINQETKQIENETNSGHSHLVL 829
+I+ DP I ++T+ ++NE +S HL+L
Sbjct: 8 NITAMDPPIAEQTRSLDNEPSSDPHHLLL 36
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 842 LGMNRELNDYDRYWFHS--QFVWSLG 771
LG N L+D D YWFH+ F+ SLG
Sbjct: 568 LGYNVLLSDVDVYWFHNPVSFLHSLG 593
>06_03_0525 -
21742288-21742605,21743348-21743542,21743553-21743789,
21745178-21745432,21745516-21745656,21745811-21745972,
21746084-21746244,21747921-21748080
Length = 542
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 117 AASPQK*AGRLCISVRTHRTFYQPLRAIL 31
A +P K A +C SV H YQP R +L
Sbjct: 340 AKNPDKQARNICYSVPAHSWHYQPKRFLL 368
>05_06_0003 +
24797098-24797223,24797981-24798193,24798289-24798444,
24798555-24798959
Length = 299
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 598 CASVPCRFDNVRRILHDVLSRRIS 669
C R D R++LHDV+ RRIS
Sbjct: 204 CLIKQSRHDEARQVLHDVVLRRIS 227
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 621 KPARNTGTSGISPV--SCNNSMFSSTSGRRCMNVVAKSTPPPNANSP 487
K TG P+ CN + S+TSG ++ ++ S+PPP+++ P
Sbjct: 681 KQTDRTGHPSSDPLIADCNICLKSATSGT--LDTISPSSPPPSSSPP 725
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,084,500
Number of Sequences: 37544
Number of extensions: 522064
Number of successful extensions: 1521
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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