Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M24
         (880 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56495| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_34272| Best HMM Match : L51_S25_CI-B8 (HMM E-Value=4.5)             29   3.7  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  29   5.0  
SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        29   6.6  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  

>SB_56495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 631 AHYQTGKEHWHIGDLSCLLQQFNVFVHFRQEMHERCSEKYSATKRQQSHHQ 479
           A Y+  K HW+      +     +F+   Q++ + C+++Y A K ++   Q
Sbjct: 89  ALYKNSKNHWNKTIHGLIYNALKLFMEMNQKLFDECTQQYKAEKLKEKEKQ 139


>SB_34272| Best HMM Match : L51_S25_CI-B8 (HMM E-Value=4.5)
          Length = 178

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -2

Query: 594 GISPVSCNNSMFSST--SGRRCMNVVAKSTPPPNANSPITS*FEDRRLGSRDFVNQLNFF 421
           G+SP   + +M +S   S    ++ +   T  P++   I +   +  L  + +V+ L  F
Sbjct: 49  GVSPSDSHENMVTSKELSSSEHVDHLDNDTHEPSSGVKIHTLSLNDTLTIKKWVDHLKVF 108

Query: 420 DINNGK-HPT 394
           D+NN K HPT
Sbjct: 109 DVNNSKCHPT 118


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 694  AQTIREERRQTVQPKEEHLGERSXNKPRDQ 783
            ++T + + +Q  +PK+     R  NKP+DQ
Sbjct: 1206 SKTSKPQNKQAARPKQARQASRKTNKPQDQ 1235


>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 632 GGFFMMYLVEELVHLYIHAREHKPSEKNDAKPFSLRKSI 748
           G   +++LV+ +    +  R+H P   ND +P +  K+I
Sbjct: 615 GEHLLLFLVQTVSRQAVEQRQHHPHRANDTRPKTKSKTI 653


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 603  QCSLPV**CAEDSS*CT*SKN*FTCTYTPGSTNHQRRTT 719
            +C+  +  CA   S CT +   FTC+ +PG T      T
Sbjct: 933  ECAADIFPCAPSGSNCTNTMGSFTCSCSPGFTGDGHNCT 971


>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 429 STGSRNPAIPTCGLRISW*WDCWRLVAEYFSLQRSCISCLKWTKTLNCCKRQ 584
           S G    AIPT     S+  D W    E    ++S I C  W      CK Q
Sbjct: 241 SLGFDGKAIPTKAPYSSFLQDGWYYTGECNGTEKSLIDCAYWRFEPMACKHQ 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,021,549
Number of Sequences: 59808
Number of extensions: 621120
Number of successful extensions: 2718
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2718
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)