Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M24
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical p... 47 2e-05
Z70306-4|CAH04694.1| 363|Caenorhabditis elegans Hypothetical pr... 34 0.15
Z67880-2|CAA91792.2| 505|Caenorhabditis elegans Hypothetical pr... 33 0.20
U42437-4|AAA83498.2| 349|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z70306-5|CAO82011.1| 337|Caenorhabditis elegans Hypothetical pr... 32 0.47
U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL032648-3|CAA21695.1| 319|Caenorhabditis elegans Hypothetical ... 30 1.9
U97009-2|AAC69029.3| 342|Caenorhabditis elegans Serpentine rece... 29 4.4
U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p... 29 5.8
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p... 29 5.8
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 7.7
>U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical
protein F55F8.9 protein.
Length = 477
Score = 47.2 bits (107), Expect = 2e-05
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = +2
Query: 338 NVLTAKIVTMVSLFGISMFVGCLPLLISKKFNW--FTKSRDPNLRSSNQXXXXXXXXXXX 511
N K+V M +F +++ VG PL + K T + +
Sbjct: 2 NEAILKLVLMFVMFSLTVIVGLSPLKVLHKLRHEAATAQSSSKHKHVSLVLCLLTCFSGG 61
Query: 512 XXXXTTFMHLLPEVDENIELLQETGEIP-DVPVFLAGLIMCGGFFMMYLVEELVHLYIHA 688
T F+HL PE+ EN+E L D PV L+ C GFF+++ +EE+V + I +
Sbjct: 62 VFLATCFLHLFPELRENLETLDTVHNFRIDYPV--GELLSCLGFFLIFFLEEVVIMIIPS 119
Query: 689 REH 697
H
Sbjct: 120 FAH 122
>Z70306-4|CAH04694.1| 363|Caenorhabditis elegans Hypothetical
protein C06G8.3b protein.
Length = 363
Score = 33.9 bits (74), Expect = 0.15
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Frame = +2
Query: 524 TTFMHLLPEVDENIELLQETGEIPDVPVFLAGLIMCGGFFMMYLVEELVHLYI----HAR 691
T F+ ++P V + + ET + + + + L +C GFF +YL+EE+ H
Sbjct: 62 TCFLDVMPHVQQTYGEILETYNV-EFRLPMNQLFICVGFFFVYLIEEITAKVFGSGGHGH 120
Query: 692 EHKPS---EKNDAKPFSLRKSISGNDPXINQETKQIENETNSGHSHLVLDSSQEXSVVSA 862
H P + K R + N + ET I ++ + HS LV++ + V
Sbjct: 121 SHGPPIPLTVDIKKEKVTRVQLIENGSSSSPETLMIPIDSRTRHS-LVVEETAPWVVSDE 179
Query: 863 LKGLL 877
+ LL
Sbjct: 180 KRNLL 184
>Z67880-2|CAA91792.2| 505|Caenorhabditis elegans Hypothetical
protein C34E7.1 protein.
Length = 505
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -2
Query: 516 STPPP----NANSPITS*FEDRRLGSRDFVNQLNFFDINNGKHPTNMD 385
+TP P N N+PI+S S DF N+L FFD+ + + P + D
Sbjct: 419 NTPQPQVQINQNTPISSVASTSSASSLDFPNELGFFDMQDPELPVSCD 466
>U42437-4|AAA83498.2| 349|Caenorhabditis elegans Hypothetical
protein F30B5.7 protein.
Length = 349
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 524 TTFMHLLPEVDENIELLQETGEIPDVPVFLAGLIMCGGFFMMYLVEE 664
T F+ ++P ++E E L ET ++ + + C GFF +Y +EE
Sbjct: 59 TCFLDIIPHINEGYEELMETYDL-NWHFAYPQFVTCCGFFFIYFIEE 104
>Z70306-5|CAO82011.1| 337|Caenorhabditis elegans Hypothetical
protein C06G8.3c protein.
Length = 337
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 524 TTFMHLLPEVDENIELLQETGEIPDVPVFLAGLIMCGGFFMMYLVEEL 667
T F+ ++P V + + ET + + + + L +C GFF +YL+EE+
Sbjct: 62 TCFLDVMPHVQQTYGEILETYNV-EFRLPMNQLFICVGFFFVYLIEEI 108
>U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical
protein F55A4.10 protein.
Length = 633
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2
Query: 615 ARNTGTSGISPVSCNNSMFSSTSGRR--CMNVVAKSTPPPNANSPITS*FED 466
ARN I S + + TSGRR + + K TP PNAN P+ S E+
Sbjct: 387 ARNFPDLSIVIKSDSTNENDKTSGRRRPSVKISKKKTPAPNANLPLKSNLEE 438
>AL032648-3|CAA21695.1| 319|Caenorhabditis elegans Hypothetical
protein Y54G9A.4 protein.
Length = 319
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 530 FMHLLPEVDENIELLQ-ETGEIPDVPVFLAGLIMCGGFFMMYLVEELVHLYIHAREHKPS 706
F+ +LP+ E E +Q +T D P LI GFF +YL EEL + + H S
Sbjct: 63 FLDMLPDCLEAWESVQTDTNYTSDYP--FVQLIALLGFFFVYLTEELSSVICNV-GHGHS 119
Query: 707 EKND 718
ND
Sbjct: 120 HSND 123
>U97009-2|AAC69029.3| 342|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 33 protein.
Length = 342
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 814 MTAIGFILNLFGLLVYXWIVPRDALP 737
+T+IGF+LNL L + W PR+ P
Sbjct: 34 LTSIGFLLNLLLLYLIIWKSPRNLTP 59
>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
protein F46F11.1b protein.
Length = 1225
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -2
Query: 711 FSDGLCSLACMYK*TNSSTKYIMKNPPHIIKPARNTGTSGISPVSCNNSMFSSTSGRR-- 538
FS GL K T++ + P KPA ++ +SG N+S SST GRR
Sbjct: 913 FSPGLYPCFLTEKERIYETRFNLSTNP---KPATSSRSSGRESRDTNDSASSSTEGRRPS 969
Query: 537 CMNVVAKSTPPPNANSPITS 478
VV TP + +T+
Sbjct: 970 IEKVVTVVTPTQLSTPSVTN 989
>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
protein F46F11.1a protein.
Length = 1339
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -2
Query: 711 FSDGLCSLACMYK*TNSSTKYIMKNPPHIIKPARNTGTSGISPVSCNNSMFSSTSGRR-- 538
FS GL K T++ + P KPA ++ +SG N+S SST GRR
Sbjct: 913 FSPGLYPCFLTEKERIYETRFNLSTNP---KPATSSRSSGRESRDTNDSASSSTEGRRPS 969
Query: 537 CMNVVAKSTPPPNANSPITS 478
VV TP + +T+
Sbjct: 970 IEKVVTVVTPTQLSTPSVTN 989
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -2
Query: 591 ISPVSCNNSMFSSTSGRRCMNVVAKSTPPPNANSPITS*FEDRRL 457
I V N F T CM ++ PP +P+T+ F + L
Sbjct: 272 IDGVDANGFNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTL 316
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -2
Query: 591 ISPVSCNNSMFSSTSGRRCMNVVAKSTPPPNANSPITS*FEDRRL 457
I V N F T CM ++ PP +P+T+ F + L
Sbjct: 272 IDGVDANGFNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTL 316
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -2
Query: 591 ISPVSCNNSMFSSTSGRRCMNVVAKSTPPPNANSPITS*FEDRRL 457
I V N F T CM ++ PP +P+T+ F + L
Sbjct: 272 IDGVDANGFNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTL 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,424,925
Number of Sequences: 27780
Number of extensions: 447230
Number of successful extensions: 1523
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -