Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M24
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.40 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   4.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   8.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   8.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 194 SVGGLRREVSVFTVQRLPHPSNQN 123
           S+GG+ R++S   VQ  P P+ ++
Sbjct: 478 SIGGITRDISSLVVQEQPTPTTES 501


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 435 QLNFFDINNGKHPTNMDMPNKDTIVTI 355
           Q+N  ++   K   + D+P K TI T+
Sbjct: 111 QINATELQKIKLEIHRDLPGKSTITTV 137


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 331 RRKRFDR*NSNNGILIRHI 387
           RRKR    NS N +++RH+
Sbjct: 334 RRKRQKINNSQNALVLRHV 352


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 755 NDPXINQETKQIENE 799
           ND  IN+E + IENE
Sbjct: 434 NDLSINEEKRTIENE 448


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 513  YFSLQRSCISCLKWTKTLNCCKRQER 590
            YF++Q   I+   WT   N  K Q R
Sbjct: 1531 YFTIQYRPINEFHWTLVSNSVKMQRR 1556


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 513  YFSLQRSCISCLKWTKTLNCCKRQER 590
            YF++Q   I+   WT   N  K Q R
Sbjct: 1527 YFTIQYRPINEFHWTLVSNSVKMQRR 1552


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +3

Query: 249 VNVTRLVRCPKNNYEIVKEKKDKRK--PWPSK 338
           + + R++  P+  YE  K  K K+K   W  K
Sbjct: 135 IELDRVLESPRGKYEFSKYDKLKKKLEEWTGK 166


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +3

Query: 249 VNVTRLVRCPKNNYEIVKEKKDKRK--PWPSK 338
           + + R++  P+  YE  K  K K+K   W  K
Sbjct: 150 IELDRVLESPRGKYEFSKYDKLKKKLEEWTGK 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,806
Number of Sequences: 438
Number of extensions: 5657
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)