Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M22
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   2.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    26   4.4  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   4.4  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    25   5.9  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   5.9  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -3

Query: 290 GVSVLSSSLHDWCMTASCAQKYRVH 216
           G+++  +   +W + + C++KYR H
Sbjct: 159 GIAIPDAETFEWLVCSECSEKYRDH 183


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 195  NILEGSRMHPILLRARCCHTP 257
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 370 VIVLPRLCSKNADC 329
           V+ +P+LCS N DC
Sbjct: 237 VLTIPKLCSSNLDC 250


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 160 GXFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSTDTPXMYLYQNR 315
           G   G L FD   Y  EAE        D  +H+S K E+      + +Y +R
Sbjct: 165 GYMPGRLEFDQ-EYMNEAELPIKDMNFDDDLHESAKHEMQLKLTMLNIYNSR 215


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 218 HSASFEYVTESKGRTPSNXPDVTALKATKFXQGLAPKQSAGSPPK 84
           +   F +V  +    P   PD+ AL   +F  G     SAG P K
Sbjct: 282 YQQEFTHVVIAMEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGK 326


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/87 (20%), Positives = 31/87 (35%)
 Frame = -3

Query: 299 YIXGVSVLSSSLHDWCMTASCAQKYRVHSASFEYVTESKGRTPSNXPDVTALKATKFXQG 120
           Y   VS      H +      + KY + S     +  +   TP     + +L A     G
Sbjct: 311 YSASVSSQPPLTHSYVHPGPQSHKYSLSSGPPASLYNANALTPEESSSIDSLFANLQAAG 370

Query: 119 LAPKQSAGSPPKXKVTQTQKTSVFNDM 39
           L P  + G     + + T+  S+  D+
Sbjct: 371 LVPPSAGGKSQGPQASCTEAVSLTADI 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,633
Number of Sequences: 5004
Number of extensions: 35799
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)