Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M22
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42522| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)          29   2.0  
SB_40476| Best HMM Match : zf-AN1 (HMM E-Value=5.9e-05)                27   8.1  

>SB_42522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 303 LPKQKKNVTQSAFFEQSRGKTMTKYTGRNFKHLSYIYH 416
           + KQ KN+ +SAFF +S    + KY   +FKH   + H
Sbjct: 57  MDKQVKNICKSAFFHRSNIAKIRKYI--SFKHCERLLH 92


>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 303 LPKQKKNVTQSAFFEQSRGKTMTKYTGRNFKHLSYIYH 416
           + KQ KN+ +SAFF  S    + KY   +FKH   + H
Sbjct: 112 MDKQVKNICKSAFFHLSNIAKIRKYI--SFKHCEILLH 147


>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
          Length = 1814

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 136  VAFKAVTSGXFDGVLPFDSVTYSKEAECT 222
            V F+ +  G FDG + FD+++ + +  CT
Sbjct: 1527 VIFEGLEGGRFDGEIAFDNISLTSDNNCT 1555


>SB_40476| Best HMM Match : zf-AN1 (HMM E-Value=5.9e-05)
          Length = 363

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -3

Query: 278 LSSSLHDWCMTAS--------CA-QKY-RVHSASFEYVTESKGRTPSNXPDVTALKATK 132
           L+S ++DW M  S        CA  +Y  VHS +++Y +E +     N P + A K  K
Sbjct: 304 LASCIYDWLMLYSIDRCGNSFCATHRYAEVHSCTYDYKSEGRKIIEQNNPVIAAPKLPK 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,944,381
Number of Sequences: 59808
Number of extensions: 284099
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)