Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M22
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025472-2|AAB71074.2|  625|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical ...    29   2.3  
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.      28   5.4  
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w...    28   5.4  
AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF025472-2|AAB71074.2|  625|Caenorhabditis elegans Hypothetical
           protein ZK250.5a protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +1

Query: 217 CTRYFCAHDAVIHQS-----CKDELSTDTPXMYLYQNRRKT*HNLHSLNKAVVKQ*PSTQ 381
           C  Y C H+ +  Q      C+ +++TD   + L +N  K  HNL S    + K     +
Sbjct: 233 CFTYHCLHENITEQFLDNLICEKQINTDGEHVRLIENEIKFIHNLGSEKMYISKLFDKNK 292

Query: 382 EE 387
           +E
Sbjct: 293 DE 294


>AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical
           protein ZK250.5b protein.
          Length = 832

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +1

Query: 217 CTRYFCAHDAVIHQS-----CKDELSTDTPXMYLYQNRRKT*HNLHSLNKAVVKQ*PSTQ 381
           C  Y C H+ +  Q      C+ +++TD   + L +N  K  HNL S    + K     +
Sbjct: 440 CFTYHCLHENITEQFLDNLICEKQINTDGEHVRLIENEIKFIHNLGSEKMYISKLFDKNK 499

Query: 382 EE 387
           +E
Sbjct: 500 DE 501


>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
          Length = 1142

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -2

Query: 360 YHGFVQRMQIVSRFSSVLVKVHXRGVCAQLIFTRLVYDSIVRAEVSGAFCFLRVCYRIKG 181
           + GF+Q+       ++ ++KV  + VC  +I   + +  I RAE  G  C  ++ Y ++G
Sbjct: 515 FRGFLQQKP---SSATAIIKVESKMVCVMMIAELMKFGVISRAE--GLSCLRQLVYDLRG 569


>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 3 protein.
          Length = 1142

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -2

Query: 360 YHGFVQRMQIVSRFSSVLVKVHXRGVCAQLIFTRLVYDSIVRAEVSGAFCFLRVCYRIKG 181
           + GF+Q+       ++ ++KV  + VC  +I   + +  I RAE  G  C  ++ Y ++G
Sbjct: 515 FRGFLQQKP---SSATAIIKVESKMVCVMMIAELMKFGVISRAE--GLSCLRQLVYDLRG 569


>AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical
           protein Y56A3A.2 protein.
          Length = 616

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 121 PXINLVAFKAVTSGXFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQ 258
           P +N +       G  D  LP+  V   +E + T+Y C H   + Q
Sbjct: 417 PQLNALLGLEGGGGGRDDALPYGGVAQPEEKKITKYSCLHARYVVQ 462


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -1

Query: 403 DKCLKFL--PVYLVIVLPRLCSKNADCVTFFFCFGKGTXQGCLCSAHL 266
           DKCL+     ++     PR CS++A C +   C+        LC A +
Sbjct: 771 DKCLQGSRPEIWQSTAEPRACSRDAQCPSTTSCYAPTPFSSGLCCASI 818


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,301,208
Number of Sequences: 27780
Number of extensions: 207155
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)