Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M19
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    31   0.27 
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    28   1.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   4.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   4.5  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    26   5.9  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   7.8  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 185  FLKRKIQPM*FHVSLLEQKSNIYLRQFKVSKSKLL*IYFTAISYTRLVS-LQQLHRLFGY 361
            F+K   +P   HV+ L+    IYL+   +S S+L  +     S  R+VS LQ LH    Y
Sbjct: 1023 FVKSLDRPPNLHVTALDTCFVIYLKVILISISRLRQVDENTNSIKRIVSRLQPLHSR-QY 1081

Query: 362  KRKRPHNISE 391
             R+ P +I +
Sbjct: 1082 TRESPFSIKD 1091


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 594 TKNIQTKCILKTCGLSLNNFNEIKSLFH 677
           +K  Q+KC++  CG  LN  N +  LF+
Sbjct: 227 SKRSQSKCLVNDCGRYLNTKNAMWELFY 254


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 232 QKTNMELHWLYFTFKELIDSSHLKLCLDIMLSSDVILCY 116
           +KT +EL W +F  K      +++L +     S ++L Y
Sbjct: 826 EKTKVELTWAHFELKVASHVEYMQLSVKAKARSHILLLY 864


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 519 SIHKVNSELQPEKKILLSVSTENFCTKN--IQTKCILKTCGLSLNNFNEIKSLFHSNENI 692
           S+  V   L  E +I LSV + N  T+N  I+TK +    G   +  +EIK+L    E  
Sbjct: 590 SLRSVRERL--EIRISLSVQSINDLTENKKIKTKTLKSYSGTFASMISEIKALESEIEEN 647

Query: 693 LYTNHNL 713
             T H+L
Sbjct: 648 RKTLHSL 654


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 525 HKVNSELQPEKKILLSVSTENFCTKNIQTKC 617
           HK+ +EL  E KIL+ + +E     NI T+C
Sbjct: 241 HKIKTELMNEPKILV-LGSEKGLRTNILTQC 270


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 444 NVIAICNFTPETILFLKQMSDNCLLSIHKVNSELQPEKK 560
           +++    F P+    L  +SD+C L IH  ++ L PE++
Sbjct: 236 DIVNDVQFHPQHEALLASVSDDCTLQIH--DTRLNPEEE 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,360,787
Number of Sequences: 5004
Number of extensions: 71841
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)