Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M19
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0057 + 19683226-19684055,19685742-19687824                       33   0.22 
02_01_0422 - 3084940-3087072                                           30   2.0  
01_06_0203 - 27487469-27489787                                         29   4.7  
12_02_0521 - 19955475-19956076,19957146-19958403                       29   6.2  
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    29   6.2  
08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281...    28   8.2  
02_04_0329 + 22081052-22082434                                         28   8.2  

>11_06_0057 + 19683226-19684055,19685742-19687824
          Length = 970

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -3

Query: 753 QLHILSFYQTLSIVNCDWCI-ICF-HWNEINFLFH*SYLSLIRMSLKYISSE 604
           QL  LS ++ L ++N + C+ +C  H  +I+ LFH  YLSL R  +  +  E
Sbjct: 569 QLPPLSDFRVLRVLNLEGCLGLCDNHLKDISILFHLKYLSLCRTWISKLPPE 620


>02_01_0422 - 3084940-3087072
          Length = 710

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 594 TKNIQTKCILKTCGLSLNNFNEIKSLFHSNENILYTNHNLLLI 722
           TKNIQ    +    LS NNF  IK+  H  +++   N N+LLI
Sbjct: 379 TKNIQNLNSITFLSLSYNNFTNIKNTLHILKSL--RNLNVLLI 419


>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 102 ELLVP*QRMTSDDNIMSRHNFKCEESISSLNVKYNQCNSMLVFW-NKNQIFIYDNLKFPN 278
           + L+P Q++T D  ++S ++    ++ +SL + YN      ++W N +     D +K  N
Sbjct: 153 DTLLPAQQLTKDTRLVSGYHSLYFDNDNSLRLVYNGPEFSSIYWPNDDYTMFRDGIKVKN 212


>12_02_0521 - 19955475-19956076,19957146-19958403
          Length = 619

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/70 (27%), Positives = 26/70 (37%)
 Frame = -3

Query: 411 IHLYS*ISEILCGRFRLYPNRRCNCCRLTSRVYDIAVKYI*SNLDLETLNCRK*IFDFCS 232
           + LY     I C         RCN C   +   ++ +  I +  D E   CR    DFCS
Sbjct: 247 VFLYKRCRNIACQSALPAEECRCNVCSNRNGFCNLCMCVICNKFDFEVNTCRWIGCDFCS 306

Query: 231 KRLTWNYIGC 202
               W +  C
Sbjct: 307 H---WTHTDC 313


>12_02_0506 -
           19794383-19794670,19795066-19795140,19795337-19798704,
           19799503-19799671,19799758-19799850
          Length = 1330

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = +2

Query: 320 RLVSLQQLHRLFGYKRKRPHNISEIQEYKCINQKYVFTI 436
           RL +L++L+ L   K++  H ISE+++ K + + +VF +
Sbjct: 788 RLTNLRELNGL-SVKKEEGHKISELKDLKNLRKVFVFDV 825


>08_02_0919 -
           22627147-22627326,22627646-22627726,22627827-22628103,
           22629451-22629755,22629835-22629987,22630318-22631076
          Length = 584

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 279 PNYSKYILPQYHIHDLLVYNNYIVCLDINGSVHIISLKFKNTNVLI 416
           PNY+KY++   H+  L  Y N I+  +++  +  +   F+N   L+
Sbjct: 230 PNYAKYLMRMAHVTKLSFYCNSILSTEVD-VLERLPFLFENLRSLV 274


>02_04_0329 + 22081052-22082434
          Length = 460

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +3

Query: 291 KYILPQYHIHDLLVYNNYIVCLDINGSVHIISLKFKNT----NVLIRNMF--SPLEQNVI 452
           K I+PQ  +HD        +   ++G VH+I+ +  N       +++N    SP E+N+I
Sbjct: 379 KTIVPQVPVHDFTDAEAPFLLAGLHGKVHVITKEANNNLQVMQAVLQNNIENSPSEENII 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,201,390
Number of Sequences: 37544
Number of extensions: 333329
Number of successful extensions: 815
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)