Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M19
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53184| Best HMM Match : Copine (HMM E-Value=0)                      35   0.096
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      31   1.6  
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_53184| Best HMM Match : Copine (HMM E-Value=0)
          Length = 277

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
 Frame = +3

Query: 492 KQMSDNCLLSIHKVNSE-LQPEKKILLSV--STENFCTKNIQTKC---ILKTCGLSLNNF 653
           K  +  CL  I++ NS+ L P +K++ S+  + E F   N+        +KT   S+  F
Sbjct: 101 KSFNGKCLHHIYRNNSKKLNPYQKVIQSIGQTLEPFDEDNLIPVFGFGDVKTKDQSVFCF 160

Query: 654 NEIKSLFHSNENILYTNHNLL-LITFDRMTIYGAVFNNQTEQISLQKIYLCPSLICNXEV 830
           NE +SL    EN+L   +N++  I+    T +  +     E +  +K Y    +I + +V
Sbjct: 161 NEDESLCKGFENVLKAYNNIVRRISLSGPTSFAPIIEKAIEIVKQEKSYYILVIIADGQV 220


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 204 NQCNSMLVFWNKNQIFIYDNLKFPNPNYSKYILPQYHIHDLLVYNNYIVCLDINGSVHII 383
           NQ N  LV     +I+I+ N    +     +I  Q +IH L+   N+++  D+  S+ ++
Sbjct: 759 NQVNGYLVSGIGQKIYIW-NFTDNDLVGMAFIDTQLYIHSLVTIRNFVIAADVCKSITLL 817

Query: 384 SLKF-KNTNVLIRNMF 428
            L+  KN  V   + F
Sbjct: 818 RLQDPKNLEVYAADFF 833


>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 411  LIRNMFSPLEQNVIAICNFTPETILFLKQ 497
            +IR ++ PL  +V+   +F PE +LFL Q
Sbjct: 1591 VIRGLWEPLSGDVVRNIDFEPEKVLFLSQ 1619


>SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 469 VKLHIAMTFCSNGENIF-LINTFVFLN 392
           V L + MTFCS G+NI   ++ F++LN
Sbjct: 261 VPLAVLMTFCSEGDNIADAVSLFLYLN 287


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,962,515
Number of Sequences: 59808
Number of extensions: 458759
Number of successful extensions: 1123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)