Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M19
(851 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88879-1|AAC34134.1| 904|Homo sapiens Toll-like receptor 3 prot... 30 9.3
DQ470079-1|ABF06637.1| 127|Homo sapiens toll-like receptor 3 pr... 30 9.3
DQ470078-1|ABF06636.1| 127|Homo sapiens toll-like receptor 3 pr... 30 9.3
DQ470077-1|ABF06635.1| 127|Homo sapiens toll-like receptor 3 pr... 30 9.3
DQ470076-1|ABF06634.1| 127|Homo sapiens toll-like receptor 3 pr... 30 9.3
DQ470075-1|ABF06633.1| 127|Homo sapiens toll-like receptor 3 pr... 30 9.3
DQ445682-1|ABE01399.1| 904|Homo sapiens Toll-like receptor 3 is... 30 9.3
BC146752-1|AAI46753.1| 1318|Homo sapiens ubiquitin specific pept... 30 9.3
BC142727-1|AAI42728.1| 1449|Homo sapiens USP19 protein protein. 30 9.3
BC142660-1|AAI42661.1| 1447|Homo sapiens USP19 protein protein. 30 9.3
BC106029-1|AAI06030.1| 799|Homo sapiens USP19 protein protein. 30 9.3
BC096335-1|AAH96335.1| 904|Homo sapiens toll-like receptor 3 pr... 30 9.3
BC096334-1|AAH96334.1| 904|Homo sapiens toll-like receptor 3 pr... 30 9.3
BC096333-1|AAH96333.1| 904|Homo sapiens toll-like receptor 3 pr... 30 9.3
BC094737-1|AAH94737.1| 904|Homo sapiens toll-like receptor 3 pr... 30 9.3
BC082241-1|AAH82241.1| 1179|Homo sapiens USP19 protein protein. 30 9.3
BC059372-1|AAH59372.1| 870|Homo sapiens TLR3 protein protein. 30 9.3
AB020698-1|BAA74914.1| 1371|Homo sapiens KIAA0891 protein protein. 30 9.3
>U88879-1|AAC34134.1| 904|Homo sapiens Toll-like receptor 3
protein.
Length = 904
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 588 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 639
>DQ470079-1|ABF06637.1| 127|Homo sapiens toll-like receptor 3
protein.
Length = 127
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 39 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 90
>DQ470078-1|ABF06636.1| 127|Homo sapiens toll-like receptor 3
protein.
Length = 127
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 39 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 90
>DQ470077-1|ABF06635.1| 127|Homo sapiens toll-like receptor 3
protein.
Length = 127
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 39 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 90
>DQ470076-1|ABF06634.1| 127|Homo sapiens toll-like receptor 3
protein.
Length = 127
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 39 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 90
>DQ470075-1|ABF06633.1| 127|Homo sapiens toll-like receptor 3
protein.
Length = 127
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 39 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 90
>DQ445682-1|ABE01399.1| 904|Homo sapiens Toll-like receptor 3
isoform NT2-N protein.
Length = 904
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 588 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 639
>BC146752-1|AAI46753.1| 1318|Homo sapiens ubiquitin specific
peptidase 19 protein.
Length = 1318
Score = 30.3 bits (65), Expect = 9.3
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +3
Query: 531 VNSELQPEKKILLSVSTENFCTKNIQTKCILKTCGLSLNNFNEIKSLFHSNENILYTNHN 710
V E + EKK+ L T N+ C + + SL+N E++ FH N+N
Sbjct: 481 VEEEEEEEKKVCLPGFTG---LVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYN 537
Query: 711 LLLITFDRMTIYGAV 755
L T R+ I AV
Sbjct: 538 NPLGTGGRLAIGFAV 552
>BC142727-1|AAI42728.1| 1449|Homo sapiens USP19 protein protein.
Length = 1449
Score = 30.3 bits (65), Expect = 9.3
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +3
Query: 531 VNSELQPEKKILLSVSTENFCTKNIQTKCILKTCGLSLNNFNEIKSLFHSNENILYTNHN 710
V E + EKK+ L T N+ C + + SL+N E++ FH N+N
Sbjct: 649 VEEEEEEEKKVCLPGFTG---LVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYN 705
Query: 711 LLLITFDRMTIYGAV 755
L T R+ I AV
Sbjct: 706 NPLGTGGRLAIGFAV 720
>BC142660-1|AAI42661.1| 1447|Homo sapiens USP19 protein protein.
Length = 1447
Score = 30.3 bits (65), Expect = 9.3
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +3
Query: 531 VNSELQPEKKILLSVSTENFCTKNIQTKCILKTCGLSLNNFNEIKSLFHSNENILYTNHN 710
V E + EKK+ L T N+ C + + SL+N E++ FH N+N
Sbjct: 647 VEEEEEEEKKVCLPGFTG---LVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYN 703
Query: 711 LLLITFDRMTIYGAV 755
L T R+ I AV
Sbjct: 704 NPLGTGGRLAIGFAV 718
>BC106029-1|AAI06030.1| 799|Homo sapiens USP19 protein protein.
Length = 799
Score = 30.3 bits (65), Expect = 9.3
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +3
Query: 531 VNSELQPEKKILLSVSTENFCTKNIQTKCILKTCGLSLNNFNEIKSLFHSNENILYTNHN 710
V E + EKK+ L T N+ C + + SL+N E++ FH N+N
Sbjct: 627 VEEEEEEEKKVCLPGFTG---LVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYN 683
Query: 711 LLLITFDRMTIYGAV 755
L T R+ I AV
Sbjct: 684 NPLGTGGRLAIGFAV 698
>BC096335-1|AAH96335.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 588 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 639
>BC096334-1|AAH96334.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 588 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 639
>BC096333-1|AAH96333.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 588 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 639
>BC094737-1|AAH94737.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 588 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 639
>BC082241-1|AAH82241.1| 1179|Homo sapiens USP19 protein protein.
Length = 1179
Score = 30.3 bits (65), Expect = 9.3
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +3
Query: 531 VNSELQPEKKILLSVSTENFCTKNIQTKCILKTCGLSLNNFNEIKSLFHSNENILYTNHN 710
V E + EKK+ L T N+ C + + SL+N E++ FH N+N
Sbjct: 379 VEEEEEEEKKVCLPGFTG---LVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYN 435
Query: 711 LLLITFDRMTIYGAV 755
L T R+ I AV
Sbjct: 436 NPLGTGGRLAIGFAV 450
>BC059372-1|AAH59372.1| 870|Homo sapiens TLR3 protein protein.
Length = 870
Score = 30.3 bits (65), Expect = 9.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 621 LKTCGLSLNNFNEIK-SLFHSNENILYTNHNLLLITFDRMTIYGAVFNNQTE 773
LK L LNN N + S+F++ ++ N LIT ++G F N TE
Sbjct: 588 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 639
>AB020698-1|BAA74914.1| 1371|Homo sapiens KIAA0891 protein protein.
Length = 1371
Score = 30.3 bits (65), Expect = 9.3
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +3
Query: 531 VNSELQPEKKILLSVSTENFCTKNIQTKCILKTCGLSLNNFNEIKSLFHSNENILYTNHN 710
V E + EKK+ L T N+ C + + SL+N E++ FH N+N
Sbjct: 534 VEEEEEEEKKVCLPGFTG---LVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYN 590
Query: 711 LLLITFDRMTIYGAV 755
L T R+ I AV
Sbjct: 591 NPLGTGGRLAIGFAV 605
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,999,449
Number of Sequences: 237096
Number of extensions: 2083367
Number of successful extensions: 7606
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7606
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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