Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M19
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    32   0.60 
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    30   2.4  
AF000299-9|AAC47984.1|  221|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF043702-8|ABD94094.1|  156|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z99772-1|CAB16921.1|  794|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z75550-14|CAA99932.1|  794|Caenorhabditis elegans Hypothetical p...    29   5.5  
U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot...    28   7.3  
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot...    28   7.3  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   7.3  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   7.3  
AL161712-20|CAC70138.1|  379|Caenorhabditis elegans Hypothetical...    28   9.7  

>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
 Frame = +3

Query: 192 NVKYNQCNSMLVFWNK--NQIFIYDNLKFPNPNYS---KYILPQYHIHDLLVYNNYIVCL 356
           +V  N  + + + WN+  N+ + +DN +  N  YS   +Y + + +I     Y  Y+  L
Sbjct: 160 DVIMNIVSYIFLIWNQKLNRKYYHDNRRVSNHTYSLGERYQISE-NIRVFKYYTRYVSIL 218

Query: 357 DINGSVHIISLKFK-----NTNVLIRNMFSPLEQNVIAICNFTPETILFLKQMSDNCLLS 521
                V I+S+ F      N   L++ +F+ L   ++ I  F P    F  QMSD+    
Sbjct: 219 TFFIIVCILSVIFSFSATPNVQRLLKFIFN-LSYTLLTI--FGP---FFFLQMSDSWQNE 272

Query: 522 IHKVNSELQPEKK 560
           +H++ S+++  KK
Sbjct: 273 LHEILSKVRLRKK 285


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 293 IYFTAISYTRLVSLQQLHRLFGYKR 367
           IYF   S TR + ++Q+ RLFG KR
Sbjct: 270 IYFVCTSSTRQIVIEQVARLFGRKR 294


>AF000299-9|AAC47984.1|  221|Caenorhabditis elegans Hypothetical
           protein E03H12.9 protein.
          Length = 221

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 525 HKVNSELQPEK----KILLSVSTENFCTKNIQTKCILKTCGLS 641
           H +NS  Q +     KI + V  +N C K++QT   +KT G+S
Sbjct: 73  HVINSITQSDSSSGSKIGIKVDPQNACPKDVQTTEYVKTVGIS 115


>AF043702-8|ABD94094.1|  156|Caenorhabditis elegans Hypothetical
           protein W03D8.5 protein.
          Length = 156

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +3

Query: 423 MFSPLE-QNVIAICNFTPETILFLKQMSDNCLLSIHKVNSELQPEKKILLSVSTENFCTK 599
           +F+P E Q  + I N   + I++  ++SDN    ++ V   L+P K + ++V+     ++
Sbjct: 57  LFTPDECQEKLTITNTHDKKIMYKLKLSDNIAFQLNPVFGVLEPGKSVDVAVTHRK--SE 114

Query: 600 NIQTKCILKTCGLSLNNFNEIKSLF 674
            ++ K I+    L   + +++K LF
Sbjct: 115 PMEGKLIIVN-SLLTGDEDKVKELF 138


>Z99772-1|CAB16921.1|  794|Caenorhabditis elegans Hypothetical
           protein H05L14.1 protein.
          Length = 794

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 185 FLKRKIQPM*FHVSLLEQKSNIYLRQFKVSKSKL 286
           FL R I+P  F V L E+++ IY+  +++ ++ +
Sbjct: 241 FLNRNIKPASFSVGLNEEETKIYMTDYRLVRTHI 274


>Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical
           protein F09C3.3 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 177 SISSLNVKYNQCNSMLVFWNKNQIFIYDNLKFPNPNYSKYILPQYHIHDLLVYN-NYIVC 353
           S S+  + YN+C    +F+++      DN +  +  YS+  + ++ IHDLL  + + IV 
Sbjct: 171 SASASKMDYNEC----MFYDRVLQLFSDNTERFSIEYSERFISRHEIHDLLARDLHRIVF 226

Query: 354 LD 359
           LD
Sbjct: 227 LD 228


>Z75550-14|CAA99932.1|  794|Caenorhabditis elegans Hypothetical
           protein H05L14.1 protein.
          Length = 794

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 185 FLKRKIQPM*FHVSLLEQKSNIYLRQFKVSKSKL 286
           FL R I+P  F V L E+++ IY+  +++ ++ +
Sbjct: 241 FLNRNIKPASFSVGLNEEETKIYMTDYRLVRTHI 274


>U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical
           protein C02F12.8 protein.
          Length = 687

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 270 FPNPNYSKYILPQYH--IHDLLVYNNYIV-CLDINGSVHIISLKFKNTNVLIRNMFSPLE 440
           FP+P+YS+Y  P  +    D++  NN +  C  ++  V ++S+    ++V     FS  +
Sbjct: 229 FPSPSYSQYSGPPANEGFPDIIYDNNGVAYCRVVSAPVCVVSMSQSGSSVCSSQSFSSGQ 288

Query: 441 QNV 449
            ++
Sbjct: 289 SDI 291


>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
           protein.
          Length = 2693

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 429 SPLEQNVIAICNFTPETILFLKQMSDNCLLSIHKVNSELQPEKKILLSVSTENFCTKNI 605
           S + +N I   +  PE IL   + S+   +    +  +L P+K + L   T  FC   +
Sbjct: 218 SHMHKNQIVHLDLKPENILLKAKNSNELKIIDFGLARKLDPKKSVKLLFGTPEFCAPEV 276


>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
           protein.
          Length = 2708

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 429 SPLEQNVIAICNFTPETILFLKQMSDNCLLSIHKVNSELQPEKKILLSVSTENFCTKNI 605
           S + +N I   +  PE IL   + S+   +    +  +L P+K + L   T  FC   +
Sbjct: 218 SHMHKNQIVHLDLKPENILLKAKNSNELKIIDFGLARKLDPKKSVKLLFGTPEFCAPEV 276


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 429   SPLEQNVIAICNFTPETILFLKQMSDNCLLSIHKVNSELQPEKKILLSVSTENFCTKNI 605
             S + +N I   +  PE IL   + S+   +    +  +L P+K + L   T  FC   +
Sbjct: 16044 SHMHKNQIVHLDLKPENILLKAKNSNELKIIDFGLARKLDPKKSVKLLFGTPEFCAPEV 16102


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 429   SPLEQNVIAICNFTPETILFLKQMSDNCLLSIHKVNSELQPEKKILLSVSTENFCTKNI 605
             S + +N I   +  PE IL   + S+   +    +  +L P+K + L   T  FC   +
Sbjct: 16044 SHMHKNQIVHLDLKPENILLKAKNSNELKIIDFGLARKLDPKKSVKLLFGTPEFCAPEV 16102


>AL161712-20|CAC70138.1|  379|Caenorhabditis elegans Hypothetical
           protein Y66D12A.20 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 504 DNCLLSIHKVNSELQPEKKILLSVSTENFCTKNIQT 611
           DN   S+     ++ P++ I  S+S E  CTKN++T
Sbjct: 339 DNANESMDIEFDDMPPKEGISKSLSAEKSCTKNVET 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,200,881
Number of Sequences: 27780
Number of extensions: 387849
Number of successful extensions: 1006
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)