Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M17
         (909 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   4.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.8  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   7.6  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 283 HLRSGRGCPDCWCPPGASQLPPLQRV 360
           HLR GRG    + P  ++ +P  + V
Sbjct: 192 HLRKGRGAIGAYGPEKSASIPKKKEV 217


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 74  GVFTGPKNCDDY 39
           G+F+ PKNC  Y
Sbjct: 564 GIFSDPKNCAAY 575


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 413 NRQPDQRILQPNQHPSG*TLCKGGSWLAP 327
           N  PD   ++P    S  TLC G   ++P
Sbjct: 285 NGSPDVIKVEPELSDSEKTLCNGSKGISP 313


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 686 APKPYARWTRYRRRPSLCASSDSDNEHRGS 597
           AP+  +R T+     S  +S+D D+E R S
Sbjct: 122 APRTASRETKSSESDSGASSADPDDELRSS 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,185
Number of Sequences: 336
Number of extensions: 5589
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)