Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M15
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    28   2.2  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    28   2.2  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.9  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    27   3.9  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   6.8  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    26   6.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +3

Query: 390 FKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPDDIFSENTELATLHL 569
           F+N+PG+  +NV   NL  + P                     L D +F   TE+A   L
Sbjct: 221 FRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIW-----TKSAFGLLDSVFGSTTEVA--QL 273

Query: 570 LKN---PIDTVYGLQISDLLTLNAGQTNIKFVGPS 665
            KN   P + +    ++ L+  +  Q+ +K  GPS
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPS 308


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 21/92 (22%), Positives = 40/92 (43%)
 Frame = +3

Query: 330 SSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNH 509
           S +  L  S C ++ I  N F ++  L+ L+++GN L+++ P               +N 
Sbjct: 332 SQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI-PYALGELPQLCSLNLASNK 390

Query: 510 IKSLPDDIFSENTELATLHLLKNPIDTVYGLQ 605
           I           + L  L L +N + ++ GL+
Sbjct: 391 ITGCRTFYHISLSHLQILVLSRNHLTSLSGLE 422


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 303 GSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDM 449
           G+E  +L    V   D++    +  +  +F N+  L YL+++ N L D+
Sbjct: 635 GNEIAYLTGCPVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQLEDL 683


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = +3

Query: 390 FKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPDDIFSENTELATLHL 569
           F+N+PG+  +NV   NL  + P                     L D +F   TE A   L
Sbjct: 221 FRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIW-----TKSAFGLLDSVFGSTTEAA--QL 273

Query: 570 LKN---PIDTVYGLQISDLLTLNAGQTNIKFVGPS 665
            KN   P + +    ++ L+  +  Q+ +K  GPS
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPS 308


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 345 LDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDM 449
           L++SY  +  I +  F+N   L +L V+GN L+++
Sbjct: 835 LNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANL 869


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 378 TANTFKNMPGLMYLNVAGNNLSDMD 452
           TA TF+N P L    + GN L ++D
Sbjct: 142 TACTFQNYPDLNTCEICGNQLKNVD 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,451,620
Number of Sequences: 5004
Number of extensions: 64155
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)