Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M15
         (950 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    61   1e-11
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            26   0.58 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 61.3 bits (142), Expect = 1e-11
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
 Frame = +3

Query: 309 ENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNL-SD-MDPDTFXXXXXX 482
           E  F +   ++E+ ++Y  ++ +    F  +  L+ LN+AGN L SD +D  TF      
Sbjct: 278 EGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRL 337

Query: 483 XXXXXRNNHIKSLPDDIFSENTELATLHLLKNPIDTVYG---LQISDLLTLNAGQTNIKF 653
                  N +  +   +F +   L  L L  N ID +     L + +L TL      ++ 
Sbjct: 338 IVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRT 397

Query: 654 VGPSMFNGMGLIANLNLSGNSIEKIHNQAF 743
           VG  +FNG+ ++  L LSGN+I  I   AF
Sbjct: 398 VGAQLFNGLFVLNRLTLSGNAIASIDPLAF 427



 Score = 41.5 bits (93), Expect = 1e-05
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 3/149 (2%)
 Frame = +3

Query: 312 NYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXX 491
           N FL   ++  L++S   ++ + A  F  +  L  L ++GN ++ +DP  F         
Sbjct: 377 NAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKEL 436

Query: 492 XXRNNHIKSLPDDIFSENTELATLHLLKNPIDTVYG---LQISDLLTLNAGQTNIKFVGP 662
               N + S+PD +  +   L TL L +N I   Y      +  L  L     +I  +  
Sbjct: 437 DLSGNELTSVPDAL-RDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSR 495

Query: 663 SMFNGMGLIANLNLSGNSIEKIHNQAFHK 749
            M   +  +  LNL+ N ++ +   AF +
Sbjct: 496 GMLWDLPNLQILNLARNKVQHVERYAFER 524



 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 6/225 (2%)
 Frame = +3

Query: 96  LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAXXXXXXXXXXX 275
           LGL ++ T++IV S +  +  N+   + +L  +NL+ N L+ ++                
Sbjct: 144 LGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLNRRDSDDGSDGN 203

Query: 276 XXXXXFPAAGSENYFLNASSVQELDVSYCNMQYITANT-FKNMPGLMYLNVAGNNLSDMD 452
                    G E+     + ++ LD+S   +  +  N+   ++  L  L++  N + ++ 
Sbjct: 204 D--------GDESSC--RADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIA 253

Query: 453 PDTFXXXXXXXXXXXRNNHIKSLPDDIFSENTELATLHLLKNPI-DTVYGL--QISDLLT 623
            D               N + SLP+ +F+   +L  +HL  N + D   G+  ++  LL 
Sbjct: 254 GDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLV 313

Query: 624 LN-AG-QTNIKFVGPSMFNGMGLIANLNLSGNSIEKIHNQAFHKL 752
           LN AG +     V  + F G+  +  LNLS N +  I  + F  L
Sbjct: 314 LNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDL 358



 Score = 33.1 bits (72), Expect = 0.004
 Identities = 43/215 (20%), Positives = 83/215 (38%), Gaps = 3/215 (1%)
 Frame = +3

Query: 96  LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAXXXXXXXXXXX 275
           LGL ++  + +  + + +I    F  +  L  ++L NN++  +  E+ A           
Sbjct: 332 LGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRI--ESNAFLPLYNLHTLE 389

Query: 276 XXXXXFPAAGSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMDP 455
                    G++  F     +  L +S   +  I    F+N   L  L+++GN L+ + P
Sbjct: 390 LSDNKLRTVGAQ-LFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSV-P 447

Query: 456 DTFXXXXXXXXXXXRNNHIKSLPDDIFSENTELATLHLLKNPIDTV-YGL--QISDLLTL 626
           D               N I +  +  F    +L  L L+ N I  +  G+   + +L  L
Sbjct: 448 DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQIL 507

Query: 627 NAGQTNIKFVGPSMFNGMGLIANLNLSGNSIEKIH 731
           N  +  ++ V    F     +  + L GN +  I+
Sbjct: 508 NLARNKVQHVERYAFERNMRLEAIRLDGNFLSDIN 542


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 749 FVECLVMDFLDTISAEVEISNKTHTVEH*WPNKLNVCLSRIK 624
           +V   ++DFL+ + A      +    +H WP+ L    SR++
Sbjct: 184 YVRSKLVDFLNDLVAIGVAGFRVDAAKHMWPSDLRTIYSRVR 225


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 877 PVEGFTCSSDRLIFTSLA 930
           PV+   CS D  +FTS A
Sbjct: 30  PVKSLVCSPDLSVFTSPA 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,069
Number of Sequences: 438
Number of extensions: 4680
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)