Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M14
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 132 8e-32
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.84
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 28 1.9
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 28 1.9
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 27 2.6
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 27 2.6
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 27 2.6
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 26 7.8
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 132 bits (318), Expect = 8e-32
Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Frame = +1
Query: 427 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRW 606
HP +FF L+FR AI+ YIL +F+ SF+ F+++ LL+ D WTVKN+SGRLLVGLRW
Sbjct: 47 HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRW 106
Query: 607 WNYVDDNGKSHWVFEARQSRVNRN--ESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLL 780
N +G+S W+FE+ RN + + FW L L P +W I + +F W+ L
Sbjct: 107 RNETGVDGESIWIFESADPSRPRNAVDQKTFWYALYLYPFIWIILGIVAIIRFEFLWLAL 166
Query: 781 VLIALTLTGANLYGYIKCKXGAK 849
V +A+ LT N Y +C AK
Sbjct: 167 VAVAIGLTSVNTAAYSRCDKDAK 189
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 227 LNILNYIGIVGNPENSKGHIQSKSLSNIKCII 132
L +L IGI +P+ SK HI+ KSL + C I
Sbjct: 1145 LRMLQKIGISPDPDLSKKHIKLKSLIIVVCSI 1176
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 1.9
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +2
Query: 194 YLLFLYNSIC-LTAVEIIDQ-YLSTYSDTHLKLICEINSIDY**TIQL*IRQRQLCHRSR 367
Y L L +SI +A E+I Y++ +DT +L N + + L + H +R
Sbjct: 537 YFLELPDSIVPSSAFELIRSIYMNHSNDTPYRLRLLQNLLSQLRRVNLATLSAIITHLNR 596
Query: 368 CLMMTPSHLVKRIMLINSLSIPT*CSSTW 454
+ +TP+ I L NSLS+ +TW
Sbjct: 597 LITLTPNKETFTINLANSLSLCISRPATW 625
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 421 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGL 600
FV+P + F L CS ++ ++L G F F+A + I L + N S R
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLHGSF---FLAVLSVDIRRLELQDFLDSNSSNR---NS 411
Query: 601 RWW 609
+WW
Sbjct: 412 KWW 414
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 170 CDLSNFQDYLLFLYNSICLTAVEIIDQYLSTYSD 271
CDL + ++LL+L NS +T +D + Y+D
Sbjct: 328 CDLYSLSNFLLYLENSCVITYDVSLDCSFNEYND 361
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 137 YT*YLRVIWIVCDLSNFQDYLLFLYNS 217
Y LR+I+ + D S F+DYL F Y +
Sbjct: 813 YVMILRLIYGIVDQSAFEDYLRFYYGN 839
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 433 YIVFFHLVFRCSAIIVYILCG-----WFSDSFIASFVLVILLLSADFWTVKNIS 579
Y+ F LV +A++V G W S I V +L+L A +W KNI+
Sbjct: 225 YLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWVEKNIA 278
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 478 VYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWV 645
V+I+ G+ F A L LL +F+ G L W +++ +NGK++W+
Sbjct: 30 VWIIYGYSIGGFFAFLSLFHLL---EFYITARFQGSQL---SWDSFILNNGKAYWL 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,450,428
Number of Sequences: 5004
Number of extensions: 72430
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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