Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M14
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327... 136 2e-32
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342... 135 4e-32
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 30 2.0
11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445 29 3.6
01_06_0409 + 29142409-29142870 29 3.6
11_06_0008 - 19181933-19182009,19185148-19185691 29 6.2
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 29 6.2
01_03_0201 + 13758227-13758760,13758784-13759452 29 6.2
08_02_1099 - 24298104-24298124,24298545-24298576,24299945-24300110 28 8.2
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 28 8.2
01_01_0522 - 3834551-3835451,3835992-3836572 28 8.2
>01_03_0129 +
12831947-12832048,12832358-12832414,12832514-12832717,
12832799-12832858,12835026-12835152,12835801-12835889
Length = 212
Score = 136 bits (330), Expect = 2e-32
Identities = 63/149 (42%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Frame = +1
Query: 415 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 594
+ + +P FFH++F+ A+ YIL F +F+ FV+ +LL + DFW VKN+SGR+LV
Sbjct: 38 ENYANPKTCFFHVLFKAGALAFYILSALFVTNFVIIFVITVLLAALDFWVVKNVSGRILV 97
Query: 595 GLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLK 762
GLRWWN +DD G S W FE +R+N+ +S LFW L L W IF L L
Sbjct: 98 GLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVLGIFSLIRLH 157
Query: 763 FKWMLLVLIALTLTGANLYGYIKCKXGAK 849
++L+V + L+L+ AN+ G+ KC AK
Sbjct: 158 ADYLLVVGVCLSLSIANIVGFTKCNKDAK 186
>05_01_0432 +
3428920-3428934,3429007-3429111,3429341-3429397,
3429499-3429702,3429790-3429849,3430797-3430923,
3431420-3431520
Length = 222
Score = 135 bits (327), Expect = 4e-32
Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Frame = +1
Query: 415 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 594
+ + +P FH++F+ A++ YIL F SF+ FV+ + L + DFW VKN+SGR+LV
Sbjct: 44 ENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVKNVSGRILV 103
Query: 595 GLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLK 762
G+RWWN +DD G S W FE +R+N+ +S LFW L L W IF L L+
Sbjct: 104 GMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAWIILGIFSLIRLE 163
Query: 763 FKWMLLVLIALTLTGANLYGYIKCKXGAK 849
++L+V + LTL+ AN+ G+ +C AK
Sbjct: 164 ADYLLVVGVCLTLSLANIVGFTRCNKDAK 192
>03_02_0067 +
5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 593 TSNRPLIFLTVQKSADSSRMTNTKLAMNESENHPHRMYTIIAEH 462
TSN L+ +V++ D+ R L NES + +Y++I +H
Sbjct: 712 TSNSTLVAKSVERLVDAIRPNLCHLVRNESNSSSEFVYSVIGKH 755
>11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445
Length = 330
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 606 VELCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLVHFFYILPFRTQVQVDA 776
+E+ G+ + GV EPG EP LD D + +G F+++LP R+ DA
Sbjct: 111 LEVLGKNGCLVEGVL--HEPGG---EPVKLDSQDLLQMGDAQFYFLLPTRSVFATDA 162
>01_06_0409 + 29142409-29142870
Length = 153
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 736 KKWTRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPHSST 605
++W+RP A G R R C GS G R P+AT H +T
Sbjct: 44 RRWSRPDLDAGGSGRR--RRQCGDGSGGGRGPAATWWLPCHLAT 85
>11_06_0008 - 19181933-19182009,19185148-19185691
Length = 206
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 726 PDQGAQRQAHPEQAALVPVDPALTGLEHPV 637
P+ G R +HP+ L+PV L GL PV
Sbjct: 113 PETGGHRVSHPQAPPLLPVLLELGGLRAPV 142
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 618 GRQRQVALGVRGPSEPGQQEREPPVLDG 701
G+QR + LG+ GP G PPVL+G
Sbjct: 245 GQQRMIDLGITGPE--GHALSRPPVLEG 270
>01_03_0201 + 13758227-13758760,13758784-13759452
Length = 400
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 649 EARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLF 753
+A ++ R+ SR +W+ T C W +F F LF
Sbjct: 148 DAGGGKITRSSSRRWWLCPTGCYARWGSFMEFLLF 182
>08_02_1099 -
24298104-24298124,24298545-24298576,24299945-24300110
Length = 72
Score = 28.3 bits (60), Expect = 8.2
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 55 ICQQIIFHPCI 23
+CQQ++FHPCI
Sbjct: 24 LCQQVLFHPCI 34
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 164 IVCDLSNFQDYLLFLYNSICLTAVEIIDQYLSTYSDTHLKLICE 295
I+C+ + F+D LLFLY + L E+I Y + L C+
Sbjct: 696 IICNANAFKDGLLFLYEKLKLFK-EVISCYKQAHDHEGLIACCK 738
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 727 TRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPHSS 608
T P S S G S S S G TP+++CR +PH +
Sbjct: 18 TAPDSRRSWISDIGSSSSVSARSFGGDTPASSCRYKPHKA 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,185,177
Number of Sequences: 37544
Number of extensions: 459360
Number of successful extensions: 1251
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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