Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M14
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)               156   2e-38
SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)                   31   1.6  
SB_49643| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)                   29   4.8  
SB_9822| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_4529| Best HMM Match : 7tm_1 (HMM E-Value=1.3)                      28   8.4  

>SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)
          Length = 323

 Score =  156 bits (378), Expect = 2e-38
 Identities = 63/98 (64%), Positives = 83/98 (84%), Gaps = 2/98 (2%)
 Frame = +1

Query: 373 DDDTIAFGEEDNA--NKQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLL 546
           +D  + FG+E+ A   ++F HPY+ FFHL FR S++I Y+LCGWFSDSFI +FV+++LLL
Sbjct: 162 EDVALNFGDEEEALSRRKFRHPYVSFFHLFFRISSVIAYLLCGWFSDSFITNFVVIVLLL 221

Query: 547 SADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ 660
           S DFWTVKN+SGRLLVGLRWWNYVD++G SHWVFE+++
Sbjct: 222 SCDFWTVKNVSGRLLVGLRWWNYVDEDGNSHWVFESKK 259


>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
          Length = 338

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 688 GGSRSC*PGSDGPRTPSATCRCRPHS 611
           GG     PG  G RTP   CRC  HS
Sbjct: 313 GGGGGGSPGLSGRRTPRGRCRCTQHS 338


>SB_49643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 649 EARQSRVNRNESRLFWMGLTLCP---LVWSTFFIFCLFGLKFKWMLL 780
           E  Q   +R   ++ WM + +     + W+ FF+ C   +KF  +LL
Sbjct: 207 EQAQRNAHRTAKKVTWMVVAIMSVFEICWTPFFVMCFINVKFPVLLL 253


>SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)
          Length = 533

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 740 IKKVDQTKGHSVRPIQNXXXXXXXXXXXRASNTQCDLPLSST*FHHLSPTSNRPLIFLTV 561
           +KK++ +K H+   IQN             +  + D+P+S       SP SN   IF   
Sbjct: 458 LKKLEFSKEHTDYDIQNIHRLRIYRLRSLDTEIKADVPVSRLFLRFFSPVSNIAEIFFVN 517

Query: 560 QKS 552
           +K+
Sbjct: 518 RKA 520


>SB_9822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 149 LRVIWIVCDLSNFQDYLLFLYNSICLTAVEIIDQYLSTYSDTHLKL 286
           L+  +  C  S F D+LL +   +C+T V  +++Y S    TH +L
Sbjct: 78  LKASYAFCRASLFFDHLLKIATVLCMTGV-AVERYFSLARLTHRRL 122


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 721 PRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPH 614
           PRG A  PS   G  S   G+ GP +  +  R  PH
Sbjct: 698 PRGRAESPSNAHGRASSPSGTRGPVSGPSGARGSPH 733


>SB_4529| Best HMM Match : 7tm_1 (HMM E-Value=1.3)
          Length = 187

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 21/96 (21%), Positives = 42/96 (43%)
 Frame = +1

Query: 499 FSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN 678
           FS +++   +++ +L S     ++++  R        +Y+ D    +  +E +  R+N  
Sbjct: 38  FSVNYLIPILVMAVLYSRIMLLIRSVKHRRRKSTP--SYLSDESPCYTGYERKFIRMNIV 95

Query: 679 ESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVL 786
              LF     LC L +  FF+   FG+  +W    L
Sbjct: 96  VMLLF----VLCYLPYQVFFLLMEFGIARRWKFAYL 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,923,158
Number of Sequences: 59808
Number of extensions: 544290
Number of successful extensions: 1340
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)