Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M13
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    29   0.45 
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    28   1.0  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.7  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   9.7  

>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +1

Query: 202 KVICVYNKQRVGXIGDRVMVAIKGQKKKGILVGLKQTQKV---KVPKFDSNNIVLIXDNG 372
           +V+ V  K R G          +G     I+V  K   +    +  +FD N  VL+    
Sbjct: 36  EVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVLVNKEC 95

Query: 373 TPLGTRIHVPIPTILRT 423
            PLGTRI   +   LRT
Sbjct: 96  EPLGTRILSVVANELRT 112


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 231 CRXYW*QSNGSYQRAKEERHS 293
           C+ YW QSNG Y   K +RH+
Sbjct: 409 CKLYW-QSNGDYLCVKVDRHT 428


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 211 CVYNKQRVGXIGD 249
           CVY KQRV  IGD
Sbjct: 145 CVYLKQRVSFIGD 157


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 318 LLCLLETYKNAFLLLPFDSYHYSVTNXTDTLFVVYTNY 205
           LL  L ++KNA L LP     YS+T+       ++  Y
Sbjct: 603 LLLDLYSFKNALLKLPDLKQDYSITDSYINHLTIFMGY 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,695
Number of Sequences: 5004
Number of extensions: 42623
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)