Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M13
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845     33   0.15 
08_01_0775 - 7531397-7531564,7531590-7532771                           27   7.5  
12_01_0465 + 3640736-3640817,3640898-3641088,3641266-3641789,364...    27   9.9  
11_03_0148 + 10762150-10762264,10762347-10762776,10764653-107647...    27   9.9  

>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
          Length = 170

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 331 KFDSNNIVLIXDNGTPLGTRIHVPIPTILR 420
           +FD N IVL+ + G  +GTR+  P+P  LR
Sbjct: 126 QFDDNAIVLVNNKGELIGTRVFGPVPHELR 155


>08_01_0775 - 7531397-7531564,7531590-7532771
          Length = 449

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 538 FFIYTNLLTMYLEIKQ-IWWL-WPVVLC 461
           + I+     MYL++K+  WW  WP V+C
Sbjct: 375 YSIHPGSTKMYLDLKEKYWWSSWPFVMC 402


>12_01_0465 +
           3640736-3640817,3640898-3641088,3641266-3641789,
           3643726-3644029
          Length = 366

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 372 SIVXY*NYVVAVELWYFDLLCLLETYKNAFLLLPFDSYHY 253
           S V Y  YV+     YFD    LE+Y N   ++  DSY +
Sbjct: 31  SYVSYDRYVLDTSEVYFDDCIPLESYLNIRPMVTSDSYQF 70


>11_03_0148 +
           10762150-10762264,10762347-10762776,10764653-10764735,
           10764980-10765068,10765178-10765251,10765333-10765383,
           10765687-10765763,10766237-10767012
          Length = 564

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 288 HSCRSQANT-KGQSTKVRQQQHSFNX*QWNTSRNQNTCTHTNYPPNNFERE 437
           +SCR +  T KG+     +++ +         +   T T TN+P +N+E+E
Sbjct: 196 NSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPVSNYEKE 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,880,910
Number of Sequences: 37544
Number of extensions: 242350
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)