Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M13
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_763| Best HMM Match : No HMM Matches (HMM E-Value=.)                93   1e-19
SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)                       32   0.27 
SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_47737| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_22306| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_19526| Best HMM Match : Pentaxin (HMM E-Value=1.7e-10)              29   1.9  
SB_30938| Best HMM Match : DAGK_acc (HMM E-Value=1.4013e-45)           29   3.3  
SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)                  28   5.8  
SB_29192| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 49/114 (42%), Positives = 72/114 (63%)
 Frame = +1

Query: 154 DNSEIGMRAMAEGKPPKVICVYNKQRVGXIGDRVMVAIKGQKKKGILVGLKQTQKVKVPK 333
           DNS +G R     KP  +I  Y K++   +GD + VA+ G+  K I+VG ++ +   VP+
Sbjct: 88  DNSALGQRTKRNRKP-YLIGFYRKRKTAEVGDVIRVAVGGKTNKAIVVGTRKPKHHSVPR 146

Query: 334 FDSNNIVLIXDNGTPLGTRIHVPIPTILRTILKEKTHSKGADYTKLLAIATKFV 495
           +D+NNIVL+ DN  PLGTRI  PIPTI+R         + A Y+K+LAIA++F+
Sbjct: 147 YDNNNIVLVDDNLAPLGTRIKGPIPTIIR--------RRQAKYSKVLAIASRFI 192


>SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)
          Length = 1392

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 289 ILVGLKQTQKVKVPKFDSNNIVLIXDNGTPLGTRIHVP 402
           +L G K+ + VK PKFD  ++ L+  +GTPL  R + P
Sbjct: 723 VLYGKKRRKLVK-PKFDVGDLELVERDGTPLEGRFYEP 759


>SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 339 VELWYFDLL-CLLETY-KNAFLLLPFDSYHYSVTNXTDTLFVVYTNYFRRFSFG 184
           V LW   ++ C+ +    N FL+    SY Y+  + T +LF +Y+N F   S G
Sbjct: 84  VTLWILPMMFCICDIADSNKFLI---QSYAYNKVSLTSSLFTLYSNVFVAVSLG 134


>SB_47737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 339 VELWYFDLL-CLLETY-KNAFLLLPFDSYHYSVTNXTDTLFVVYTNYFRRFSFG 184
           V LW   ++ C+ +    N FL+    SY Y+  + T +LF +Y+N F   S G
Sbjct: 14  VTLWILPVMFCICDIADSNKFLI---QSYAYNKVSLTSSLFTLYSNVFVAVSLG 64


>SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 267 QRAKEERHSCRSQANTKGQSTKVRQQQHSFNX*QWNTSRNQNTCTHTNYPPNNFERENS 443
           Q+ ++++   + Q   + Q  + +QQQ   N    +   N NT T  N   NN    NS
Sbjct: 33  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQHNLSNSSDINNNNTTTSNNNNNNNNNNNNS 91


>SB_22306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 339 VELWYFDLL-CLLETY-KNAFLLLPFDSYHYSVTNXTDTLFVVYTNYFRRFSFG 184
           V LW   ++ C+ +    N FL+    SY Y+  + T +LF +Y+N F   S G
Sbjct: 28  VTLWILPMMFCICDIADSNQFLI---QSYAYNKVSLTSSLFTLYSNAFVAVSLG 78


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 375  TSRNQNTCTHTNYPPNNFERENSF*R 452
            T +N++ C HT+ PP+NF    S+ R
Sbjct: 1085 TCKNKDLCDHTSAPPSNFRPRVSYVR 1110


>SB_19526| Best HMM Match : Pentaxin (HMM E-Value=1.7e-10)
          Length = 274

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 339 VELWYFDLL-CLLETY-KNAFLLLPFDSYHYSVTNXTDTLFVVYTNYFRRFSFG 184
           V LW   ++ C+ +    N FL+    SY Y+  + T +LF +Y+N F   S G
Sbjct: 14  VTLWILPMMFCICDIADSNNFLI---QSYAYNKVSLTSSLFTLYSNAFVAVSLG 64


>SB_30938| Best HMM Match : DAGK_acc (HMM E-Value=1.4013e-45)
          Length = 709

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +3

Query: 168 RNASHGRRKTSESNLCIQQTTCRXYW*QSNGSYQRAKEERHSCRSQANTKGQSTKVRQQQ 347
           R+ S  R  TSE+      T  R    Q+    +  K +R++  +++NT     ++ + Q
Sbjct: 114 RDTSENRSNTSENRSNTSATQVRIGQTQAQHKRESVKHKRNTSENRSNTSATKARIGRTQ 173

Query: 348 HSFN 359
              N
Sbjct: 174 EQHN 177


>SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)
          Length = 376

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 264 YQRAKEERHSCRSQANTKGQSTKVRQQQHSFNX*QWNTSRNQNTCTHTNYPPNNFERENS 443
           YQ+  ++RH  R +A  KG + + R++       + N  R +   + TN   NN E   +
Sbjct: 6   YQQTIKQRHRQREKATRKGNAKRQREKAARKAARRGNGKRQREKGSATN-GENNGEHSKT 64

Query: 444 F 446
           F
Sbjct: 65  F 65


>SB_29192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 279 EERHSCRSQANTKGQSTKVRQQQHSFNX*QWN 374
           EE  SCR     KG+ TK++ ++ S +  +WN
Sbjct: 631 EEACSCRVCGANKGEYTKLKSKRISLHGIKWN 662


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,120
Number of Sequences: 59808
Number of extensions: 302631
Number of successful extensions: 806
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)