Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M13
         (549 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    26   0.94 
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           24   3.8  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   8.8  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   8.8  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 25.8 bits (54), Expect = 0.94
 Identities = 12/56 (21%), Positives = 23/56 (41%)
 Frame = +3

Query: 249 QSNGSYQRAKEERHSCRSQANTKGQSTKVRQQQHSFNX*QWNTSRNQNTCTHTNYP 416
           Q     QR ++++   + +   + Q  + +QQQH     QW   + Q      + P
Sbjct: 329 QQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQQHQQQQQQWQQQQQQQQQPRQSLP 384


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 264 YQRAKEERHSCRSQANTKGQSTKVRQQQHSFNX*QWNTSRNQNTCTHTNYPP 419
           YQ  ++++   + Q  ++ Q  + +QQQ       W+ S   N  T +  PP
Sbjct: 410 YQPQQQQQQQQQQQPQSQQQQQQQQQQQQQSGSATWSGSNTLN-YTQSIQPP 460


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +1

Query: 181 MAEGKPPKVICVYNKQRVGXIG---DRVMVAIKGQKKKGILVGLKQTQKVKVPKFDSNNI 351
           MA G  P+   +  +Q V  I    +   + +  +K +G+++   +  ++KVP    + I
Sbjct: 671 MARGCTPQEAALVAEQAVDAIAAWMEDHHLQLAPEKTEGVMISSLRRGQLKVPFRVGDTI 730

Query: 352 VLIXDNGTPLGTRIH 396
           +    +   LG +IH
Sbjct: 731 IHSKQSIRYLGVQIH 745


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 217 IHKLLSEVFLRPWLAFRFQSYQQH 146
           IH  LS++ + P+L    +SY  H
Sbjct: 558 IHAALSKMMIPPYLCRLLRSYLDH 581


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,282
Number of Sequences: 2352
Number of extensions: 10660
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)