Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M13
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29536-3|AAA68795.2|  179|Caenorhabditis elegans Hypothetical pr...    73   1e-13
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    31   0.72 
U97593-7|AAB52878.1|  591|Caenorhabditis elegans Prion-like-(q/n...    29   1.7  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   1.7  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   1.7  
AL132948-43|CAB61061.2|  511|Caenorhabditis elegans Hypothetical...    28   3.9  
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine r...    27   6.7  
Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z81576-8|CAB76724.1|  440|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U80024-2|AAK18892.1|  327|Caenorhabditis elegans Serpentine rece...    27   8.9  
AL023837-4|CAB76749.1|  440|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U29536-3|AAA68795.2|  179|Caenorhabditis elegans Hypothetical
           protein F45E12.5b protein.
          Length = 179

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
 Frame = +1

Query: 154 DNSEIGMRAMAEGKPPKVICVYNKQRVGX------IGDRVMVAIKGQKKKGILVGLK--- 306
           DNS +G  A   GK P  I VY + R         +GD+++VAI+GQ +K  +VG     
Sbjct: 63  DNSALGKEADTTGKLPYCIHVYKQGRRAKHMPHAELGDKILVAIRGQMRKAYVVGANTHV 122

Query: 307 QTQKVKVPKFDSNNIVLIXDNGTPLGTRIHVPIPTILRTILKEKTHSKGADYTKLLAIAT 486
             +K  VP  D N IVL+ + G PLG RI  PIPT      K   +     ++K+LA+A 
Sbjct: 123 HYRKHGVPVTDQNMIVLLDEEGNPLGNRITAPIPT------KLMANRGNVQFSKVLALAN 176

Query: 487 KFV 495
           KF+
Sbjct: 177 KFI 179


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 288  HSCRSQANTKGQSTKVRQQ-QHSFNX*QWNTSRNQNTCTHTNYPPNNFERENSF*RS*LH 464
            HS  +Q +T+ +S K ++   H  +  Q    +N  T T +N+P +NF   +    S  +
Sbjct: 1252 HSDPNQKSTERESRKPKEAVSHGNSRKQSKPPKNHQTKTTSNFPSHNFPPPDLMRNSHYN 1311

Query: 465  KTTGHSHQ 488
            +    SHQ
Sbjct: 1312 QNMSTSHQ 1319


>U97593-7|AAB52878.1|  591|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform b protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 249 QSNGSYQRAKEER-HSCRSQANTKGQSTKVRQQQHSFNX*QWNTSRNQNTCTHTN 410
           Q +G  Q   E R +S  + +N   Q+ + +QQQH +     N  R  N+  +TN
Sbjct: 17  QPSGGQQSYNETRQYSSNATSNYPSQTQQYQQQQHQYQSDHSNAQRLLNSGYNTN 71


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 249 QSNGSYQRAKEER-HSCRSQANTKGQSTKVRQQQHSFNX*QWNTSRNQNTCTHTN 410
           Q +G  Q   E R +S  + +N   Q+ + +QQQH +     N  R  N+  +TN
Sbjct: 436 QPSGGQQSYNETRQYSSNATSNYPSQTQQYQQQQHQYQSDHSNAQRLLNSGYNTN 490


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 249 QSNGSYQRAKEER-HSCRSQANTKGQSTKVRQQQHSFNX*QWNTSRNQNTCTHTN 410
           Q +G  Q   E R +S  + +N   Q+ + +QQQH +     N  R  N+  +TN
Sbjct: 601 QPSGGQQSYNETRQYSSNATSNYPSQTQQYQQQQHQYQSDHSNAQRLLNSGYNTN 655


>AL132948-43|CAB61061.2|  511|Caenorhabditis elegans Hypothetical
           protein Y39B6A.41 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 128 GYLQGF-VLLITLKSECEPWPKENLRK*FVYTTNNVSVXLVT 250
           G LQGF V+LI   +EC P  K  L   F+ +   +   LVT
Sbjct: 125 GMLQGFRVVLIIWIAECSPDSKRGLTSLFINSGGVIMTLLVT 166


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 250 CHQXNRHVVCCIHKLLSEVFL 188
           CH+    V  C+H++LS+V L
Sbjct: 401 CHKNEGSVATCVHEILSDVLL 421


>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 252 SNGSYQRAKEERHSCRSQ----ANTKGQSTK-VRQQQHSFNX*QWNTSRNQNTCTHTNYP 416
           S+   +RA+   H  RS+    ++ +G S+K  RQQQH       + SR   + +   YP
Sbjct: 250 SSSRRRRARRRSHRSRSRTYSTSSDRGSSSKRSRQQQHMKRKTPSSPSRRSRSRSPPPYP 309

Query: 417 PNN 425
           P +
Sbjct: 310 PGH 312


>Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical
           protein F54C8.2 protein.
          Length = 261

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -1

Query: 327 YFDLLCLLETYKNAFLLLPFDSYHYSVTNXTDTLFVVYTNYFRRFSFGHGSH 172
           Y DL+ LL+ YKN    + F+    +          V +N      + HG H
Sbjct: 45  YADLIALLDQYKNDLEAVGFNDLEQARRRAPSVDITVGSNSTNLVDYSHGRH 96


>AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein19 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 538 FFIYTNLLTMYLEIKQIWWLWPVVLCNQLL 449
           FF +  ++ +    K++W+L P V+ NQ+L
Sbjct: 174 FFFFLAIIYIGARKKKLWYLEPAVVINQIL 203


>Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5b protein.
          Length = 276

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 336 ELWYFDLLC---LLETYKNAFLLLPFDS--YHYSVTNXTDTLFVVYTNYFRRFS 190
           E W   ++C   LL    N FL L  +S  + Y +     T FV+++N+F  FS
Sbjct: 144 EFWSIKIVCFPSLLNFPHNLFLSLVSNSMIFSYFLEFSLFTNFVIFSNFFIHFS 197


>Z81576-8|CAB76724.1|  440|Caenorhabditis elegans Hypothetical
           protein Y37H2C.3 protein.
          Length = 440

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 330 WYFDLLCLLETYKNAFLLL-PFDSYHYSVTNXTDTLFVVYTN 208
           W F  + L   Y N  L L P  S  Y+  N TD++  +Y N
Sbjct: 161 WNFKTITLSAGYFNTILTLSPTHSMIYTFLNRTDSIVGLYEN 202


>U80024-2|AAK18892.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein125 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -2

Query: 431 FKIVRRIVGMGTCILVPRGVPLSXIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATIT 252
           F+I   I+G   CI+      +  +K  +L+ +F T+   + +    +PF   P +A + 
Sbjct: 29  FEIPFHIIG-AYCIIRKTPERMKNVKLNMLIKHFSTIFMSLSMSLFIIPFMMLPALAGVP 87

Query: 251 L 249
           L
Sbjct: 88  L 88


>AL023837-4|CAB76749.1|  440|Caenorhabditis elegans Hypothetical
           protein Y37H2C.3 protein.
          Length = 440

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 330 WYFDLLCLLETYKNAFLLL-PFDSYHYSVTNXTDTLFVVYTN 208
           W F  + L   Y N  L L P  S  Y+  N TD++  +Y N
Sbjct: 161 WNFKTITLSAGYFNTILTLSPTHSMIYTFLNRTDSIVGLYEN 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,973
Number of Sequences: 27780
Number of extensions: 235789
Number of successful extensions: 585
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)