Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M10
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = +2

Query: 536 SGLRAGNDHHRRGSSGSDVRAVPEWKTLQETGQDVSERWKETNFTFRRVNTKDIRR 703
           S   + N   +R S   ++   PE++   +   ++SE +   N T  + + ++ RR
Sbjct: 625 SSKNSENSIMQRASMKENLNVYPEFQENVQLCSEISESYSSNNKTLCKCDAQNCRR 680


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 469 APLLFWYRICQSWGTLAP 522
           +PL  WY +  SW  L P
Sbjct: 428 SPLNDWYSLASSWPALVP 445


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 550 WKRSSPTRKQRLRCQSCARMENFAGNWTG 636
           W+ S PT+ + L   +CA +      W+G
Sbjct: 35  WRDSLPTKMRELNATACAALYERV-EWSG 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,789
Number of Sequences: 438
Number of extensions: 6042
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)