Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M05
         (842 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.43 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.3  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   2.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.2  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 189 CQCRQNSRCANMENTELRTNTRCSEGHRKILQR 287
           C+   NSRC + E+++     RC  G   + +R
Sbjct: 76  CRDLPNSRCNSRESSDSLVQPRCPSGESMLSER 108


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 264 LLSNGYWFEVLYSPYLHT 211
           +LSNGY +   Y P LH+
Sbjct: 74  VLSNGYGYGNYYHPQLHS 91


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 264 LLSNGYWFEVLYSPYLHT 211
           +LSNGY +   Y P LH+
Sbjct: 74  VLSNGYGYGNYYHPQLHS 91


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 264 LLSNGYWFEVLYSPYLHT 211
           +LSNGY +   Y P LH+
Sbjct: 74  VLSNGYGYGNYYHPQLHS 91


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 264 LLSNGYWFEVLYSPYLHT 211
           +LSNGY +   Y P LH+
Sbjct: 74  VLSNGYGYGNYYHPQLHS 91


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 316  SDSRNNLSWDIHYWI 360
            +D+  N ++ IHYWI
Sbjct: 2038 ADATFNTNFTIHYWI 2052


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 395 PQSSPLAWTTSSGAPRS 445
           P ++P   TTSSG+P S
Sbjct: 30  PAAAPPPATTSSGSPAS 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,704
Number of Sequences: 336
Number of extensions: 4587
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)