Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M05
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    29   1.1  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    27   2.5  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.4  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    26   5.8  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    26   7.7  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   7.7  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +2

Query: 368 SRRKTSQEPPQSSPLAWTTSSGAP-RSSTERPWVTKVLCSYHISRHP*PIWREGIRPVLT 544
           S+R TS   P++   +   SS     SS    W    L  YH       +  + ++ V +
Sbjct: 306 SKRDTSSHYPETLKASSKHSSPVKGNSSISSTWTPSNLKIYHSKNSMGLMDLDALKTVAS 365

Query: 545 TSSRTREPRNECSRSKGSEMSALDK 619
            S    +P+N  +   G+E+  LD+
Sbjct: 366 NSKYRTKPKNCKTYGDGTELDTLDE 390


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +2

Query: 308 GRPRTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTERPWVT--KVLC 481
           G P       +G++T   +GS   T    P +SPL  T S    RSS+   WV   K+  
Sbjct: 205 GSPTKSIYDQNGLTTPRPIGSDDLTHMYDPYTSPLR-TPSRTLSRSSSHYLWVRHGKLTR 263

Query: 482 SYHISRHP*P 511
           S  + +H  P
Sbjct: 264 SVSLLQHKTP 273


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 689 SLSARKLRTLRSLKRFRSPIKYGIRIITDAEKSILWT 799
           SL  RKL T++ LK  R  +   IRI+T+A  +  WT
Sbjct: 43  SLEKRKL-TVQDLKDTRMELNNMIRILTEAMAAHEWT 78


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 234 ELRTNTRCSEGHRKILQ--RRFIHHFTDDLGQSQQSIMGYPLLDRSGVDARRVRSRRN 401
           E + N     G   ++Q  +R ++   + +GQ +  I G P  +R  V+  R+RS R+
Sbjct: 16  EEKLNDLSKSGENSVIQSCQRLLNEIDEVIGQMEIEITGIPTSERGLVNG-RIRSYRS 72


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +1

Query: 601 DVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHH 771
           D R+ QV+    ++ +G   +    N+  V +G + KNV KL+ +S   ++   D+H
Sbjct: 14  DGRLLQVEYGQEAVRRGTTAIALRGNECIV-IGVERKNVPKLQNVSNFQKIAMVDNH 69


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 636 SYLRIDLSNADIS--LPFDLEHSFLGSRVRDDV 544
           S L  D+ + D +  LPF L+H+F+G  V  D+
Sbjct: 106 SDLEFDILSIDFTQRLPFYLKHTFMGLAVSRDI 138


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -3

Query: 639 RSYLRIDLSNADISLPFDLEHS-----FLGSRVRDDVVKTGRIPSLQIGQGCLE 493
           R YL ++L   ++  PFDLE +     F    V +D +    +PSL I  G +E
Sbjct: 301 REYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLP--HLPSLDIRDGAVE 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,599,694
Number of Sequences: 5004
Number of extensions: 80196
Number of successful extensions: 236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)