Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M05
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 174 8e-44
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 169 2e-42
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 152 3e-37
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 129 2e-30
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 109 2e-24
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 31 1.5
09_02_0347 + 7604466-7604622,7604809-7605146 29 4.6
01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313 29 4.6
01_05_0608 - 23628100-23631486 29 4.6
07_03_0105 + 13455906-13457198 29 6.1
04_01_0418 - 5531652-5531827,5535111-5535195,5535250-5535402,553... 29 6.1
01_07_0346 + 42889121-42890406,42896115-42896118 29 6.1
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 28 8.1
09_06_0175 + 21350528-21351136 28 8.1
09_01_0039 - 687711-688607,692336-693113,693414-693501,693761-69... 28 8.1
05_06_0149 - 25991761-25993181,25993246-25993324 28 8.1
03_02_0616 - 9874882-9874974,9875067-9875189,9875284-9875379,987... 28 8.1
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 174 bits (423), Expect = 8e-44
Identities = 87/212 (41%), Positives = 129/212 (60%), Gaps = 3/212 (1%)
Frame = +1
Query: 208 AGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDES 387
+G+++WRI+NF+P+PV GKFY GDSYIIL+TT+ + D+HYW+G++++QDE+
Sbjct: 37 SGLEVWRIENFKPVPVPTSSHGKFYMGDSYIILKTTALKNGSFRHDLHYWLGKDTSQDEA 96
Query: 388 GAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNAGA 567
G AAILTV LD GG AVQ+RE G E+ LSYF+ + GG SGFNHV N
Sbjct: 97 GTAAILTVELDAALGGRAVQYREVQGGETEKLLSYFRPCIMPQPGGVASGFNHVEVNQQD 156
Query: 568 Q-KRMFQVKGKRDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFA 744
R++ +GK V V++V +S+N D F+L N I+ F G + E+ KA+
Sbjct: 157 HVTRLYVCQGKHVVHVKEVPFVRSSLNHEDIFILDTANKIFQFNGSNSCIQERAKALEVV 216
Query: 745 NQVRDQDHHGRGKVDIVD--KYSSDVDVXKFF 834
++D H G+ +V V+ K +D + +F+
Sbjct: 217 QYIKDTFHEGKCEVAAVEDGKLMADTEAGEFW 248
Score = 60.5 bits (140), Expect = 2e-09
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 11/183 (6%)
Frame = +1
Query: 205 TAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRT-TSDSRNNLSWDIHYWIGRESTQD 381
T +Q+WR+ ++ D K Y GD YI T T D + I W G++S ++
Sbjct: 406 TGHLQVWRVNGDGKTLLSSSDQSKLYTGDCYIFQYTYTGDDKEECL--IGTWFGKKSVEE 463
Query: 382 ESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNA 561
+ +A L + A Q R G E F FQ+ L +GG SG+ + +
Sbjct: 464 DRTSAISLASKMFQAAKFQAAQARLYEGKEPIQFFVIFQS-LQVFKGGLSSGYKNFIAVN 522
Query: 562 GAQK--------RMFQVKGK--RDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAK 711
G +F+++G +++ QVD +S+N C++L N ++ + G
Sbjct: 523 GTDDDTYVEGGLALFRIQGSGSENMQAIQVDAVSSSLNSSYCYILHNGNTVFTWTGNLTT 582
Query: 712 NVE 720
+++
Sbjct: 583 SLD 585
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 169 bits (412), Expect = 2e-42
Identities = 83/212 (39%), Positives = 128/212 (60%), Gaps = 3/212 (1%)
Frame = +1
Query: 208 AGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDES 387
+G++IWRI+ + +PV ++ G+F+ GDSY+IL+TT+ + DIHYW+G++++QDE+
Sbjct: 76 SGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTALKNGSFRHDIHYWLGKDTSQDEA 135
Query: 388 GAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNAGA 567
G AAI TV LD GG AVQ+RE G+E+ FLSYF+ + EGG SGF H N
Sbjct: 136 GTAAIKTVELDAALGGRAVQYREVQGNETERFLSYFKPCIIPEEGGIASGFRHTEINERE 195
Query: 568 Q-KRMFQVKGKRDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFA 744
R+F +GK V V++V +S+N D F+L + I+ F G + E+ KA+
Sbjct: 196 HVTRLFVCRGKHTVHVKEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVV 255
Query: 745 NQVRDQDHHGRGKVDIVD--KYSSDVDVXKFF 834
++D +H G+ V V+ K +D D +F+
Sbjct: 256 QYLKDSNHEGKCDVGSVEDGKLMADADAGEFW 287
Score = 68.5 bits (160), Expect = 6e-12
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 19/242 (7%)
Frame = +1
Query: 55 FSCLLFVFLGSVWARTATK--PQEISGPITSLSDK---NARDKAKVHPAFAN----VGRT 207
F ++F S W + A E G + +L + N + AK P + T
Sbjct: 391 FETVIFRSKFSKWPKKADAVVSDESRGKVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCT 450
Query: 208 AGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDES 387
+Q+WR+ E ++ + KFY GD YI + + I W G++S QDE
Sbjct: 451 GNLQVWRVNGTEKTFLSFSEQCKFYSGDCYIF-QYSYPGEEGEECLIGTWFGKKSVQDEK 509
Query: 388 GAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNAGA 567
A + + + AV R G E A F S FQ L +GG +G+ V+ G
Sbjct: 510 TTAISVASKMVESLKFQAVMVRLYEGKEPAEFFSIFQN-LVIFKGGVSTGYKKFVSENGI 568
Query: 568 QK--------RMFQVKGK--RDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNV 717
+ +F+V+G +++ QVD S+N C+VL + ++ ++G + ++
Sbjct: 569 EDDTYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSYCYVLHDGDTLFTWIGNLSSSM 628
Query: 718 EK 723
++
Sbjct: 629 DQ 630
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 152 bits (369), Expect = 3e-37
Identities = 83/212 (39%), Positives = 121/212 (57%), Gaps = 2/212 (0%)
Frame = +1
Query: 205 TAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDE 384
T G++IWRI+NF+P+P+ GKF+ GDSYIIL+TT+ +L DIHYWIG++++QDE
Sbjct: 49 TGGLEIWRIENFKPVPIPASSYGKFFMGDSYIILKTTALKNGSLRHDIHYWIGKDTSQDE 108
Query: 385 SGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNAG 564
SG AAILTV LD GG AVQ+RE G+E+ FLSYF+ + GG SGF HV
Sbjct: 109 SGTAAILTVELDAALGGRAVQYREIQGNETDKFLSYFRPCIMPQPGGVASGFKHV----- 163
Query: 565 AQKRMFQVKGKRDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFA 744
+V +S+N D F+L + I+ F G + E+ KA+
Sbjct: 164 -----------------EVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVV 206
Query: 745 NQVRDQDHHGRGKVDIVD--KYSSDVDVXKFF 834
++D H G+ +V V+ + +D + +F+
Sbjct: 207 QYIKDTFHEGKCEVAAVEDGRLMADAEAGEFW 238
Score = 60.5 bits (140), Expect = 2e-09
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 12/197 (6%)
Frame = +1
Query: 169 AKVHPAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYII--LRTTSDSRNNLSW 342
AK P A + T +Q+WRI + + I + D KFY GD YI + D L
Sbjct: 391 AKEEPQ-AYIDCTGSLQVWRINDKDKILLPSADQSKFYTGDCYIFQYMYPGDDKEECL-- 447
Query: 343 DIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEG 522
I W G++S +++ A L + + AVQ R G E F FQ+ +G
Sbjct: 448 -IGSWFGKKSIEEDRVTAISLASKMVESAKFQAVQTRLYEGKEPIQFFVIFQS-FQVFKG 505
Query: 523 GNPSGFNHVVTNAGAQK--------RMFQVKGK--RDVRVRQVDPQIASMNKGDCFVLSL 672
G SG+ + G +F+++G +++ QVD +S+N ++L
Sbjct: 506 GLSSGYKKFIAENGIDDDTYLEDGLALFRIQGSGPENMQAIQVDAAASSLNSSYSYILHD 565
Query: 673 DNDIYVFVGEKAKNVEK 723
N ++ + G ++++
Sbjct: 566 GNTVFTWTGNLTTSLDQ 582
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 129 bits (312), Expect = 2e-30
Identities = 73/180 (40%), Positives = 103/180 (57%), Gaps = 2/180 (1%)
Frame = +1
Query: 301 ILRTTSDSRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESAL 480
I T S +DIH+WIG++S+QDE+G AAI TV LD GG AVQHRE G+ES
Sbjct: 54 ITTTCSKGGGAYLFDIHFWIGKDSSQDEAGTAAIKTVELDTMLGGRAVQHRELQGYESDK 113
Query: 481 FLSYFQTPLTYLEGGNPSGFNHVVTNAGAQKRMFQVKGKRDVRVRQVDPQIASMNKGDCF 660
FLSYF+ + LEGG SGF + R++ KGKR +RV++V +S+N D F
Sbjct: 114 FLSYFKPCIIPLEGGFASGFK-TPEEDKFETRLYICKGKRAIRVKEVPFARSSLNHDDVF 172
Query: 661 VLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVD--KYSSDVDVXKFF 834
+L + IY F G + E+ KA+ +++ H+G V IVD K ++ D +F+
Sbjct: 173 ILDTEKKIYQFNGANSNIQERAKALEAIQHLKETYHNGVCDVAIVDDGKLQAESDSGEFW 232
Score = 61.3 bits (142), Expect = 9e-10
Identities = 38/154 (24%), Positives = 68/154 (44%)
Frame = +1
Query: 133 ITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRT 312
I S +A +V P G+ ++++ + + ++++GKFY GD YI+L T
Sbjct: 376 IKGASKSSAPVDEEVPPLLEGDGK---LEVYCVNGSAKTALPKEELGKFYSGDCYIVLYT 432
Query: 313 TSDSRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSY 492
+ + YWIG++S ++ A + + G + R G E F++
Sbjct: 433 YHSGDKREEFYLTYWIGKDSIPEDQEMAFQTANSIWNSLKGRPILGRIYQGKEPPQFIAL 492
Query: 493 FQTPLTYLEGGNPSGFNHVVTNAGAQKRMFQVKG 594
FQ P+ L+GG SG+ V G + + G
Sbjct: 493 FQ-PMVILKGGISSGYQKFVEEKGLKDETYSGDG 525
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 109 bits (263), Expect = 2e-24
Identities = 61/204 (29%), Positives = 103/204 (50%)
Frame = +1
Query: 175 VHPAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDSRNNLSWDIHY 354
V AF VG G+ IW I I + + GKFY G++YIIL T ++HY
Sbjct: 4 VDDAFLGVGDKPGLDIWCIMGSNLIAIEKSLHGKFYTGNTYIILSTVELKSGVRQHNVHY 63
Query: 355 WIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPS 534
W+G E+ +++ A+ + LD G VQ+RET G ES FLSYF+ + ++ G+ S
Sbjct: 64 WVGEEAKEEDCLTASDKAIELDVALGSNTVQYRETQGEESDKFLSYFKPCIIPIQ-GSLS 122
Query: 535 GFNHVVTNAGAQKRMFQVKGKRDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKN 714
+ + MF+ +G+ RV +V +S++ FV+ ++ I++F G +
Sbjct: 123 SHMRIYGDKSKDTTMFRCEGEHVARVTEVPFSRSSLDHKAVFVVDTESKIFLFSGCNSSM 182
Query: 715 VEKLKAISFANQVRDQDHHGRGKV 786
+ KA+ +++ H GR ++
Sbjct: 183 QTRAKALDVVKHLKENRHCGRCEI 206
Score = 44.0 bits (99), Expect = 2e-04
Identities = 32/134 (23%), Positives = 56/134 (41%)
Frame = +1
Query: 214 VQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDESGA 393
+++W + N + ++ + Y GD YII + + + W G S ++ A
Sbjct: 402 LKVWLVDNGSVTLLCTEEQEQLYNGDCYIIRYSYIEDGKDYHL-FFAWSGLNSINEDRVA 460
Query: 394 AAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLTYLEGGNPSGFNHVVTNAGAQK 573
AA L G+ D G AV + G E +F F++ L +GG + + V+
Sbjct: 461 AASLMSGMIDSVKGHAVVAQVFEGREPEMFFLVFKS-LIIFKGGRSMAYKNFVSQRSDAN 519
Query: 574 RMFQVKGKRDVRVR 615
+Q G RV+
Sbjct: 520 GWYQKNGVALFRVQ 533
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/101 (22%), Positives = 44/101 (43%)
Frame = +2
Query: 485 YHISRHP*PIWREGIRPVLTTSSRTREPRNECSRSKGSEMSALDKSIRR*LR*TKATASF 664
+ + RH +W+E +R + R++ + ++ S+ + + R +
Sbjct: 604 FRVLRH---LWKEDVRLLSVRKQRSKSHKRTDQSNRSSQSGSQRQRSSNRSRLAVPAGNL 660
Query: 665 LV*TTTSMSLSARKLRTLRSLKRFRSPIKYGIRIITDAEKS 787
T MS ARKL + LKR R+ +K I+ + EK+
Sbjct: 661 STFPITEMSGVARKLFSEFQLKRCRNYLKMPALIVDEKEKA 701
>09_02_0347 + 7604466-7604622,7604809-7605146
Length = 164
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 189 CQCRQNSRCANMENTELRTNTRCSEGHRKILQRRFIHHFTDDLGQSQQSIMGYPLLDRSG 368
CQ R N + +N + +R + H ++QR F+ +T +Q + + DRSG
Sbjct: 43 CQGRSNMFKGDCKNKNM-FESRVDDLHSHLIQRGFMKGYTCWAKHGEQELGSGAVADRSG 101
Query: 369 VD 374
D
Sbjct: 102 AD 103
>01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313
Length = 289
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 347 STTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTER-PWVTK 472
ST + SRR+ + P SS +AWT A R W+TK
Sbjct: 67 STYLASSSRRRRKRPPVTSSDVAWTVEDAAIGDELRRGTWMTK 109
>01_05_0608 - 23628100-23631486
Length = 1128
Score = 29.1 bits (62), Expect = 4.6
Identities = 25/87 (28%), Positives = 37/87 (42%)
Frame = -3
Query: 654 VAFVHRSYLRIDLSNADISLPFDLEHSFLGSRVRDDVVKTGRIPSLQIGQGCLEI**EQS 475
V F S+L+ + SLP LEH +G + TG++P L I L + S
Sbjct: 668 VTFSRASFLQASGNKLHGSLPPSLEHISVGRIYLGSNLLTGQVPQLPISMTRLNL---SS 724
Query: 474 TFVTHGLSVLDRGAPELVVQANGEDCG 394
F++ L L E ++ AN G
Sbjct: 725 NFLSGPLPSLKAPLLEELLLANNNITG 751
>07_03_0105 + 13455906-13457198
Length = 430
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 458 VSRCWTAAPPNLSSRPTVRIAAA 390
V R W +A P+L+SRP +AAA
Sbjct: 37 VCRAWRSALPSLASRPLAPVAAA 59
>04_01_0418 -
5531652-5531827,5535111-5535195,5535250-5535402,
5535516-5535632,5536136-5536363
Length = 252
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 583 QVKGKRDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVR 756
+VKG++D R QI + GDC+++S + + E +N L +S N+++
Sbjct: 125 KVKGEKDEVYRGASTQILGVAVGDCYIMSTSGNDAGMLLEGVRNNNGL--VSLNNELK 180
>01_07_0346 + 42889121-42890406,42896115-42896118
Length = 429
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 317 RTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAP 439
R+ T G +TTGSV SRR+ + + A T SS P
Sbjct: 125 RSATTKTSGAATTGSVSSRRRARRAAAVARHSAATPSSAPP 165
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 296 TSFYGRPRTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSST 451
TS G PR AT +T GS R+T P QS+P T+ +PR++T
Sbjct: 104 TSVQGAPRAPATA----ATVPQGGSPRRTV--PAQSAPGGPATAQSSPRAAT 149
>09_06_0175 + 21350528-21351136
Length = 202
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +3
Query: 360 RSGVDARRVRSRRNPHRWPGRQVRGRRGPAPRDHGSRKCF 479
R G ARRVRS R P R P RR PRD F
Sbjct: 80 RGGGGARRVRSPRTPSRPPNSTSARRR--RPRDAAGTSLF 117
>09_01_0039 -
687711-688607,692336-693113,693414-693501,693761-694148,
694176-694401,694527-694680,695073-695145
Length = 867
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 583 QVKGKRDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEK-AKNVEKLKAISFANQVR 756
++ G+ RVR+VD + N+ DCF + +D + + K + V K+KA N R
Sbjct: 33 ELYGRSFGRVREVDVEADGCNRHDCFRILVDLPVAKPLKSKIGQKVNKVKATYQPNASR 91
>05_06_0149 - 25991761-25993181,25993246-25993324
Length = 499
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = -1
Query: 482 NKALS*PMVSRCWTAAPPNLSSRPTVRIAAAPDSSCVDSRPIQ*WISHDRLLRLSEVVRK 303
N A+S ++R AA P++ T R+ APDS V + PI+ SHD L + V+R+
Sbjct: 71 NDAVSADAMARL-AAANPSI----TFRLLPAPDSPDVGAHPIK--RSHDTLKLANPVLRE 123
Query: 302 MMYESP 285
+ P
Sbjct: 124 FLRSLP 129
>03_02_0616 -
9874882-9874974,9875067-9875189,9875284-9875379,
9875457-9875666,9875718-9875812,9876032-9876123,
9876539-9876660
Length = 276
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 192 QCRQNSRCANMENTELRTNTRCSEG-HRKILQRRFIHHFTDDLGQSQQSIMGYPLLD 359
QC S+C+ +T +R + CSE R+IL+ +H+ +L Q + ++D
Sbjct: 79 QCPLFSKCSLTIDTVIRPDNGCSENTKRQILREHNVHNQAHNLTSEQLAAREVEVVD 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,963,042
Number of Sequences: 37544
Number of extensions: 597534
Number of successful extensions: 2107
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2097
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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