Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M04
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 74 1e-14
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 73 3e-14
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 67 2e-12
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 54 2e-08
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 38 0.002
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 27 2.9
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 2.9
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 3.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 3.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 5.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.1
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 26 5.1
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 6.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 6.7
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 25 8.9
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 25 8.9
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 74.1 bits (174), Expect = 1e-14
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 8/174 (4%)
Frame = +3
Query: 93 STPVGQKIEQATDGALPSENWALNMEICDIINSSTDG-PKDAIKAIRKRLTTSAGKNYTV 269
S + + I++ATD N ALN+EI D+IN P++A I KR+ ++ N TV
Sbjct: 4 SQTLSKYIDKATDQFNLEPNLALNIEIADLINEKKGNTPREAALLILKRVNSA---NPTV 60
Query: 270 VMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDP---PTVVQDKVLSLIQCW 440
L +L+ CVKNCG PFH + ++EF++ V N P +Q K+L +++ W
Sbjct: 61 SYLALHLLDICVKNCGYPFHFQIASEEFLNGFVSRF--PNHPISRMNKIQSKMLEMLEEW 118
Query: 441 ADAF-QNQAELQGVGQVYN--ELRT-KGVEFPMTDLDAMAPIFTPQRSVPDGVE 590
+N + ++++ EL +G +FP D D++A + P S+ E
Sbjct: 119 NYMLCKNNRHREDFSRIHDIRELMAFRGYKFPAVDEDSIA-VMKPNNSLRSAQE 171
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 72.9 bits (171), Expect = 3e-14
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 7/176 (3%)
Frame = +3
Query: 114 IEQATDGALPSENWALNMEICDIINSSTDG-PKDAIKAIRKRLTTSAGKNYTVVMYTLTV 290
I+ AT+ + A+N++I D+IN + P++A AI +++ +N TV L +
Sbjct: 12 IQNATEPYAFEPDLAVNLDIADLINQTGGNLPREAAFAIVRKVND---RNPTVAYLALNL 68
Query: 291 LETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTV--VQDKVLSLIQCWADAF---- 452
L+ CVKNCG F + + +KEF++ELV+ P+ P + +Q +LSLI+ W
Sbjct: 69 LDICVKNCGYAFRLQIASKEFLNELVRRF-PERPPSRLNKIQVMILSLIEEWRKTICRVD 127
Query: 453 QNQAELQGVGQVYNELRTKGVEFPMTDLDAMAPIFTPQRSVPDGVEQXGSPHRSVL 620
+ + +L + ++ L KG FP D + +A + Q+SV E+ R +
Sbjct: 128 RYKEDLGFIRDMHRLLSYKGYTFPEIDKENLAVL--SQKSVLKTAEELEKEDREAM 181
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 66.9 bits (156), Expect = 2e-12
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Frame = +3
Query: 114 IEQATDGALP--SENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLT 287
IE+AT LP SE +L +EI D I S + PK A++ ++ R+ S N V + L
Sbjct: 15 IEKATSETLPAGSEEISLYLEISDQIRSKSVDPKFAMRILKSRIDHS---NPNVQIMALK 71
Query: 288 VLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAF-QNQA 464
+ +TCVKN G F + + ++EF+ LV ++ V+ +L IQ WA A +
Sbjct: 72 LTDTCVKNGGSGFLLEIASREFMDNLVSILRSPAGIDEDVKMVILRYIQSWALAVPDTNS 131
Query: 465 ELQGVGQVYNELRTKGVEFP 524
L + VY L+ EFP
Sbjct: 132 PLSYIIHVYQNLKDGDYEFP 151
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 53.6 bits (123), Expect = 2e-08
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Frame = +3
Query: 114 IEQATDGALPSENWALNMEICDIINS-STDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTV 290
I QATD E W + M+ CD ++S S D +++IK + KRL T+ N + + LT+
Sbjct: 13 ILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTA---NANIQLLALTL 69
Query: 291 LETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQNQAEL 470
+ VKNC + ++ F L+K I + V+ ++ L+ WA+ + +
Sbjct: 70 TDAIVKNCKTSIVREISSRTFTDSLLK-IASDSTTHNRVRSRIAVLVNEWAEIMKKDPNM 128
Query: 471 QGVGQVYNELR 503
+ + ++R
Sbjct: 129 SLMQDICEKIR 139
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/135 (17%), Positives = 63/135 (46%)
Frame = +3
Query: 96 TPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVM 275
T V I++ T E+ + +++ + +N + GP++A + +RK+L S +
Sbjct: 11 TAVTTYIDRLTSRDTDDEDLSGIVQLSEAVNLTVTGPREASRTLRKKLKYSTPHEQ---V 67
Query: 276 YTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQ 455
L +L+ ++N G F + + E + + + ++ V+ + + +I+ W + +
Sbjct: 68 RALVILQALIENAGSHF-LQNFSDEKLEDRMLQCATNSEYSKPVRKRAIHMIKLWHNDYS 126
Query: 456 NQAELQGVGQVYNEL 500
N ++ + + + L
Sbjct: 127 NVRGMESMSSLVSRL 141
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 558 TPQRSVPDGVEQXGSPHRSVLP 623
TPQ++V V+Q SPH S +P
Sbjct: 251 TPQKTVRSIVKQTSSPHSSKMP 272
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 390 DPPTVVQDKVLSLIQCWADAFQNQAE--LQGVGQ 485
DPP V++ + +CW D F A L+ +G+
Sbjct: 130 DPPDVIKPNPAAKYECWIDPFSLPASKALEAIGK 163
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Frame = +3
Query: 30 SIDKYFIILQKCRFFG-----VXNPFSTPVGQKIEQATDGALPSENWALNMEICDI 182
SI FII + F G NPF PV + +++A D P N L C I
Sbjct: 54 SIGTMFIITPQANFEGGENDPFANPFQPPVKRAVKEAWDSFEPLSNDQLMDLTCPI 109
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 464 SLVLEGIGPTLDEAQYF 414
SL+ EG+ PTLDE F
Sbjct: 433 SLITEGVNPTLDEVSKF 449
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 88 PFLRRWVKKLNKPQMAHYH 144
P RRW KLN PQMA+ H
Sbjct: 242 PTYRRW--KLNLPQMANLH 258
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 345 KEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQNQ 461
+ F+ +L KLI +P + +Q +LSLI+ A A Q +
Sbjct: 884 RSFLPDLFKLIKDFWNPHSNLQFTILSLIESLARAMQGE 922
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 438 WADAFQNQAELQGVGQVYNELRTKGVE 518
WA FQ+ L V V N +R +G+E
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIE 205
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 111 KIEQATDGALPSENWALNMEICDIINSSTD 200
KI +D A+PS ++A N+ +I+++TD
Sbjct: 640 KISTVSDTAVPSMSFANNISSRSVISAATD 669
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 589 STPSGTLRCGVKIGAMASKSVIGNSTPLVRSSLYT*PTPCNSA 461
STP +L + S SV+ +STP+ S++ TP S+
Sbjct: 2565 STPITSLTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSS 2607
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 106 VKKLNKPQMAHYHLKIGL 159
+ L KP+ AH+HLK+ L
Sbjct: 226 ITALQKPKRAHFHLKMDL 243
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 504 TKGVEFPMTDLDAMAPIFTPQRSVPDGVEQXGSPH 608
T+ F +DLD +P+FT S D V Q S +
Sbjct: 428 TQPAYFGSSDLDQSSPLFTGVLSSSDSVPQWTSSY 462
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 8.9
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 409 CTTVGGSFLGPINFTNSDINSLLQTXTWNGFPQFFTHVSRTVSVYITTV*FFPALVVN 236
C +GG F+G + DI W+G + + V ++V + TV F L V+
Sbjct: 67 CLAIGGGFIGAFYALDKDI--------WSGSEEIWEGVFSLIAVVLITVMGFAMLRVS 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,496
Number of Sequences: 5004
Number of extensions: 66155
Number of successful extensions: 196
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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