Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M04
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 112 2e-25
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 109 1e-24
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 109 2e-24
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 109 2e-24
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 107 5e-24
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 106 2e-23
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 95 5e-20
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496... 87 8e-18
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 80 2e-15
08_01_0063 + 439640-439740,440067-440145,440586-440684,440767-44... 69 3e-12
01_01_0098 + 744582-745380,746107-746130,746500-747569 31 0.74
03_06_0636 - 35215034-35215336,35215417-35215584,35215599-352157... 28 5.2
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 112 bits (269), Expect = 2e-25
Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 1/174 (0%)
Frame = +3
Query: 87 PFSTPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYT 266
P P ++++AT L +WA+N+EICD +N+ KD +KA++KRL K+
Sbjct: 10 PARLPASTRVDKATSHLLQGPDWAINLEICDTLNADRWQTKDVVKAVKKRL---QHKDPR 66
Query: 267 VVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWAD 446
V +TLT+LET +KNCG+ H V + + E+V+++ K+D T V+DKVL L+ W +
Sbjct: 67 VQFFTLTLLETMMKNCGEYVHFEVVEQHILQEMVRIVQKKHD--TQVRDKVLILLDSWQE 124
Query: 447 AFQNQ-AELQGVGQVYNELRTKGVEFPMTDLDAMAPIFTPQRSVPDGVEQXGSP 605
AF + Y EL+ G+ FP +DA PIFTP + + GSP
Sbjct: 125 AFGGPGGKYPQYYWSYIELKRSGIMFPRRPVDA-PPIFTPPAT--HHTQSYGSP 175
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 109 bits (263), Expect = 1e-24
Identities = 61/152 (40%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Frame = +3
Query: 111 KIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTV 290
++E+AT L +WA+N+EICDIIN+ KD +KA++KRL K+ V Y LT+
Sbjct: 21 RVEKATSHLLMGPDWAVNLEICDIINADVWQTKDVVKAVKKRL---QNKDPKVQFYALTL 77
Query: 291 LETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQNQ-AE 467
LET +KNCG+ + V + + E+VK+I KND +V+DK+L L+ W +AF ++
Sbjct: 78 LETMMKNCGEYVQLEVAEQHVLQEMVKIIQKKND--MLVRDKILLLLDSWQEAFGGPGSK 135
Query: 468 LQGVGQVYNELRTKGVEFPMTDLDAMAPIFTP 563
Y E++ G FP +DA PIFTP
Sbjct: 136 YPQYHFAYLEVKRIGAVFPRRPIDA-PPIFTP 166
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 109 bits (262), Expect = 2e-24
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 1/166 (0%)
Frame = +3
Query: 111 KIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTV 290
++++AT L +W LN++ICD +NS K+ IKA++KRL KN V + LT+
Sbjct: 7 RVDKATSELLLGPDWTLNIDICDAVNSDHGQAKEVIKALKKRL---QHKNSKVQFFALTL 63
Query: 291 LETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAF-QNQAE 467
LET +KNCG H V ++ + E++K++ K D ++DK+L L++ W +AF N +
Sbjct: 64 LETLMKNCGDHVHSQVVERDILQEMIKIVKKKTD--MQLRDKILVLLESWQEAFGGNGGK 121
Query: 468 LQGVGQVYNELRTKGVEFPMTDLDAMAPIFTPQRSVPDGVEQXGSP 605
Y E++ G+EFP DA API TP + P +E P
Sbjct: 122 HPQYYWAYAEMKKLGLEFPRRSPDA-APILTPPITRPTSLESYHQP 166
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 109 bits (261), Expect = 2e-24
Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Frame = +3
Query: 96 TPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVM 275
TP + +E+AT L +W+ N+EICD+IN+ + I+ I+KR+ K+ V
Sbjct: 383 TPADKIVEEATSENLDGPDWSANLEICDLINTEKVNSVELIRGIKKRIML---KDARVQY 439
Query: 276 YTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV--QDKVLSLIQCWADA 449
+L +LET VKNC K F + + + E+V+LI +DP TVV ++K L LI+ W ++
Sbjct: 440 LSLVLLETIVKNCEKAFSEVAAER-VLDEMVRLI---DDPQTVVNNRNKALMLIEAWGES 495
Query: 450 FQNQAELQGVGQVYNELRTKGVEFPMTDLDAMAPIFTPQRSVPD 581
L + Y L+++GV FP D +++APIFTP RSV +
Sbjct: 496 GDELRYLPVYEETYKSLKSRGVRFPGRDNESLAPIFTPARSVAE 539
>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 107 bits (258), Expect = 5e-24
Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Frame = +3
Query: 114 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTVL 293
+++AT + + +WA N+EICD++N+ + I+AI++R+ KN V L +L
Sbjct: 52 VDEATLETMDAPDWATNLEICDMVNTGNVNSIELIRAIKRRIML---KNPRVQYLALVLL 108
Query: 294 ETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV--QDKVLSLIQCWADAFQNQAE 467
ET VKNC K F + + + E+VKLI +DP TVV ++K L LI+ W ++
Sbjct: 109 ETVVKNCEKAFSEIAAER-VLDEMVKLI---DDPQTVVNNRNKALMLIEAWGESGDELRY 164
Query: 468 LQGVGQVYNELRTKGVEFPMTDLDAMAPIFTPQRSVP 578
L + Y LR++G+ FP D +++APIFTP RS P
Sbjct: 165 LPVYEETYKSLRSRGIRFPGRDDESLAPIFTPPRSAP 201
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 106 bits (254), Expect = 2e-23
Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Frame = +3
Query: 105 GQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTL 284
G +++AT L +WA NMEICDI N KD +KA++KR+ KN V + L
Sbjct: 3 GSMVDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRI---GHKNPKVQILAL 59
Query: 285 TVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQN-Q 461
T+LET +KNCG FH+ V ++ + E+VK++ K+D V++KVL++I W +AF +
Sbjct: 60 TLLETAIKNCGDIFHMHVAERDVLHEMVKIVKKKSDQN--VKEKVLTMIDTWQEAFGGPR 117
Query: 462 AELQGVGQVYNELRTKGVEFPMTDLDAMAPIFTPQ 566
A Y++L G FP D AP+F Q
Sbjct: 118 ARYPQYYAAYHDLVRAGAAFPKRS-DRPAPLFNGQ 151
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 94.7 bits (225), Expect = 5e-20
Identities = 54/155 (34%), Positives = 85/155 (54%)
Frame = +3
Query: 114 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTVL 293
+++AT+ L +WA+N+EICD +N KD +K+I+KR+ A +N V + LT+L
Sbjct: 6 VDRATNDMLIGPDWAMNLEICDTLNRDPGQAKDVVKSIKKRI---AHRNAKVQLLALTLL 62
Query: 294 ETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQNQAELQ 473
ET +KNCG H+ V K+ + E+VK++ K P V++K+L+LI W + F +A
Sbjct: 63 ETMIKNCGDIVHMQVAEKDILHEMVKIV--KKRPDFHVKEKILTLIDTWQEVFGGRA--- 117
Query: 474 GVGQVYNELRTKGVEFPMTDLDAMAPIFTPQRSVP 578
G FP + PIFTP ++ P
Sbjct: 118 ------------GAVFPQRS-NGSVPIFTPPQTQP 139
>11_01_0620 -
4964263-4965052,4965578-4965663,4966332-4966413,
4967052-4967156,4967600-4967772,4967988-4968101,
4973939-4974037,4974320-4974398,4975424-4975492,
4975955-4976061
Length = 567
Score = 87.4 bits (207), Expect = 8e-18
Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 24/178 (13%)
Frame = +3
Query: 117 EQATDGALPSENWALNMEICDIIN--------SSTD---------------GPKDAIKAI 227
E+AT L +WA+N+E+CDIIN +TD KD +K +
Sbjct: 9 ERATSDMLIGPDWAVNIELCDIINMDPGYNLMEATDFGDELVSFVVEVQFRQAKDTLKLL 68
Query: 228 RKRLTTSAGKNYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV 407
+KRL KN V + TL VLET KNCG + + ++ +SE+VK++ K P V
Sbjct: 69 KKRL---GNKNSKVQILTLYVLETLSKNCGDVVYQQIIERDILSEMVKIV--KKKPDLNV 123
Query: 408 QDKVLSLIQCWADAFQN-QAELQGVGQVYNELRTKGVEFPMTDLDAMAPIFTPQRSVP 578
++K+LSLI W AF Y ELR GV+FP + + P+FTP ++ P
Sbjct: 124 REKILSLIDTWQVAFGGASGRYPQYHAAYQELRNAGVDFPPRE-ENTVPLFTPPQTQP 180
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 79.8 bits (188), Expect = 2e-15
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 180 IINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFIS 359
I+ S KD +K+I+KR+ KN + + LT+LET +KNCG H+ V ++ +
Sbjct: 57 ILQYSRSQAKDVVKSIKKRI---GHKNSKIQLLALTLLETLIKNCGDFVHMHVAERDILH 113
Query: 360 ELVKLIGPKNDPPTVVQDKVLSLIQCWADAF-QNQAELQGVGQVYNELRTKGVEFPMTDL 536
E+VK+ K P V++K+L LI W +AF ++A Y EL G FP
Sbjct: 114 EMVKI--AKKKPDYHVKEKILILIDTWQEAFGGSRARYPQYYVAYQELLRAGAVFPQRP- 170
Query: 537 DAMAPIFTPQRSVP 578
D+ PI+TP ++ P
Sbjct: 171 DSSVPIYTPPQTQP 184
>08_01_0063 +
439640-439740,440067-440145,440586-440684,440767-440880,
441218-441381,442237-442312,442502-442587,442706-442861,
442934-443264
Length = 401
Score = 68.9 bits (161), Expect = 3e-12
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 5/161 (3%)
Frame = +3
Query: 108 QKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLT 287
+ ++ AT L +WA N+EIC+++ KD IK I+K L S KN +Y +
Sbjct: 4 EMVKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYL-GSRSKN--TQLYAVM 60
Query: 288 VLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQN-QA 464
+LE + NCG+P H V + + LVK++ K + P V++K+ L+ + +
Sbjct: 61 LLEMLMNNCGEPIHKQVIDNGLLPILVKIVKKKTELP--VREKIFLLLDATQTSLGGVKG 118
Query: 465 ELQGVGQVYNELRTKGVEFP----MTDLDAMAPIFTPQRSV 575
+ Y EL + GV+F + A AP+ P+ ++
Sbjct: 119 KFPQYYGAYYELVSAGVQFSNRPNVVVTQAQAPVPVPEPTI 159
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 318 KPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWAD 446
+P ++ C+KEF + +I N TV+ DKV+ LI C D
Sbjct: 135 EPGRIVRCSKEFTTSRASMIDGYN---TVIADKVVRLIPCLRD 174
>03_06_0636 -
35215034-35215336,35215417-35215584,35215599-35215799,
35215877-35215962,35216037-35216229,35216304-35216489
Length = 378
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 390 HFWGQSILPTLI*IPYCRRXHG 325
+FWG ++ PT +PY RR HG
Sbjct: 158 NFWG-NVYPTYAALPYLRRSHG 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,832,858
Number of Sequences: 37544
Number of extensions: 461810
Number of successful extensions: 1150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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