Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M04
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                   129   2e-30
SB_53310| Best HMM Match : VHS (HMM E-Value=0)                        105   3e-23
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      84   8e-17
SB_18055| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   4e-16
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_4577| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)         29   4.1  
SB_16321| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)        28   7.1  
SB_1850| Best HMM Match : fn3 (HMM E-Value=7.5e-22)                    28   7.1  
SB_54208| Best HMM Match : fn3 (HMM E-Value=0)                         27   9.4  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.4  
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)               27   9.4  
SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score =  129 bits (311), Expect = 2e-30
 Identities = 58/92 (63%), Positives = 72/92 (78%)
 Frame = +3

Query: 120 QATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTVLET 299
           +ATDG L SE+W+LN+EICDIIN + +GPKDA KAIRKRLT +  KN+  V+ TLTVLE+
Sbjct: 2   RATDGGLASEDWSLNLEICDIINETDEGPKDAAKAIRKRLTNN--KNFKSVLLTLTVLES 59

Query: 300 CVKNCGKPFHVLVCNKEFISELVKLIGPKNDP 395
           C+KNCG  FHVLV  KEF+ E+ KL+ PK  P
Sbjct: 60  CIKNCGHRFHVLVAKKEFLDEMTKLLSPKQSP 91


>SB_53310| Best HMM Match : VHS (HMM E-Value=0)
          Length = 253

 Score =  105 bits (252), Expect = 3e-23
 Identities = 52/146 (35%), Positives = 86/146 (58%)
 Frame = +3

Query: 117 EQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTVLE 296
           E+AT     +E+W + MEICD I  S +GPKDA+++I KR+     +N  + M  LT+L 
Sbjct: 45  EKATSELNTTEDWQIIMEICDKIPRSPNGPKDALRSIMKRVIH---RNPHIAMQALTLLS 101

Query: 297 TCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQNQAELQG 476
            CV NCGK FH+ +C+++F+SE   ++  +  P   V DK   LI+ W + F+   +L  
Sbjct: 102 ACVNNCGKVFHLEICSRDFVSEAKSILLSRTHPK--VMDKFKELIKEWVNMFKEDPQLSL 159

Query: 477 VGQVYNELRTKGVEFPMTDLDAMAPI 554
           +  +  +L+T+GV+  +  +D +  I
Sbjct: 160 ISVMCEQLKTEGVDLGVVQVDVIMMI 185


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
 Frame = +3

Query: 204 PKDAIKAIRKRLTTSAGKNYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGP 383
           PK A+ AI+K++     +N  V  Y LTVLE C+KNCG   H  +  K+F+ E+  LI  
Sbjct: 110 PKFAVSAIKKKMFD---RNPHVAKYALTVLEACMKNCGSIIHDEIATKDFMDEMRNLIKN 166

Query: 384 KNDPPTVVQDKVLSLIQCWADAFQNQAELQGVGQVYNELRTKGVEFP-MTDLDAM 545
             DP   V+DK L LIQ W+ AF+N+ + + V   +N ++ +G +FP   + DAM
Sbjct: 167 GADP---VKDKALGLIQTWSHAFRNEPKYKIVQDTFNLMKMEGCKFPAFNESDAM 218


>SB_18055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 34/60 (56%), Positives = 46/60 (76%)
 Frame = +3

Query: 390 DPPTVVQDKVLSLIQCWADAFQNQAELQGVGQVYNELRTKGVEFPMTDLDAMAPIFTPQR 569
           +PP VVQ+K+LSLIQ WADAF+N  ++  + Q Y  LR++G+EFP  DLD ++PIFTP R
Sbjct: 2   NPPQVVQEKILSLIQDWADAFRNSPDMSAILQTYEGLRSQGIEFPPKDLDTLSPIFTPHR 61


>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2641

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 33  IDKYFII---LQKCRFFGVXNPFSTPVGQKIEQATDGALPSENWALNMEICDII 185
           + +Y+II   +Q  + + +    +  +G+K+    D ALP E ++L    CD++
Sbjct: 84  VSRYYIIHVIIQPSKKYFINLKVTNSLGKKVTLMPDDALPPEGFSLGAHECDVV 137


>SB_4577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -1

Query: 589 STPSGTLRCGVKIGAMASKSVIGNSTPLVRSSLYT*PTPC 470
           +TP+G L CG+ +    S  ++ N+TP+ R S+ + P  C
Sbjct: 14  TTPTGVL-CGIHLRITPSLDILSNNTPIHRRSIRS-PGAC 51


>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +3

Query: 384 KNDPPTVVQDKVLSLIQCWADAFQNQAELQGVGQVYNELRTKGVEFPMTDLDAMAPIFTP 563
           +NDPP++      S++Q   D   N A +Q V +    +  K ++  ++   A+    T 
Sbjct: 378 RNDPPSITNHSTASMMQKLLDLISNNALIQHVTKPTRPVSLKTLDLVISSTPALVSDITI 437

Query: 564 QRSVPD 581
              + D
Sbjct: 438 HPGMSD 443


>SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)
          Length = 592

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 358 DINSLLQTXTWNGFPQFFTHVSRTVSVYITTV*FFPALVVNLFLIALMASLG 203
           DI+ +     +NGFP  F  V+ T+ +   ++ +F  L++   LI+ M  LG
Sbjct: 275 DIDIVGSHSQYNGFPNQFADVTLTIWMRRESLDYFINLIIPCCLISSMIFLG 326


>SB_16321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +3

Query: 237 LTTSAGKNYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQD- 413
           LT S+ +    + +T +   +C + C  P    + + E +  L  L   K    T + + 
Sbjct: 145 LTCSSKREVGKLQHTTSSHHSCSRTCIDP----LISGEAMGGLKYLSHEKTPSVTTILNS 200

Query: 414 -KVLSLIQCWADAFQNQAELQGVGQVYNELRTKGVEF 521
            K LSLI  W D  + +   +   +  +E+R +G EF
Sbjct: 201 TKPLSLILKWRDKKKGELGEERFKKYQSEIRKRGTEF 237


>SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)
          Length = 477

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
 Frame = -3

Query: 356 YKFLIADEXMERLSTVFYACFQDSQRVH----HHCVVLPSACSQPFSYCFNGI-FRSVRT 192
           Y   IAD  +E+   +F AC  D  R+         V P    +       GI F+ + T
Sbjct: 193 YLVNIADSTLEKFPNIFIACGGDLNRLDICRLEELTVFPEVSERQVWKALEGIKFKKIET 252

Query: 191 AVYYI 177
            +Y I
Sbjct: 253 DIYKI 257


>SB_1850| Best HMM Match : fn3 (HMM E-Value=7.5e-22)
          Length = 461

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 427 RLNTLSCTTVGGSFLGPINFTNSDINSLLQTXTW 326
           R++     T  G  + P NFT   +NS   T TW
Sbjct: 60  RMSDAVRATTSGELIAPNNFTVDHVNSTCFTVTW 93


>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1292

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 403 TVGGSFLGPINFTNSDINSLLQTXTW 326
           T  G  + P NFT   +NS   T TW
Sbjct: 8   TTSGELIAPNNFTVDHVNSTCFTVTW 33


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = -1

Query: 601  EPXCSTPSGTLR-CGVKIGAMASKSVIGNSTPLVRSSLYT*PTPCNSAWF 455
            +P C+ P   L  C  +      K V+G   P+ R      P  C+  WF
Sbjct: 4546 QPVCAEPGRKLSPCQKQYELALQKHVVGRWIPMCRPDGSYEPVQCDRGWF 4595


>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
          Length = 825

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 84  NPFSTPVGQKIEQATDGALPS 146
           NP STPV     +AT G LPS
Sbjct: 145 NPLSTPVSTTSTKATQGLLPS 165


>SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 93  STPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPK 209
           STPV  ++ +A  G    E+  +N E C + N STD  K
Sbjct: 435 STPVWTQVGEAYKGGQQGEDMCMNGEFCYMYN-STDKTK 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,232,689
Number of Sequences: 59808
Number of extensions: 509233
Number of successful extensions: 1059
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)