Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M04
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical pr... 229 9e-61
U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical pr... 228 3e-60
U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte grow... 94 6e-20
U97407-8|AAN84851.1| 397|Caenorhabditis elegans Prion-like-(q/n... 62 2e-10
U97407-7|AAB52480.2| 457|Caenorhabditis elegans Prion-like-(q/n... 62 2e-10
Z68014-4|CAA92026.2| 588|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical pr... 34 0.072
AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative tran... 34 0.072
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 34 0.072
Z81552-2|CAB04485.1| 331|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z81552-1|CAB04484.1| 331|Caenorhabditis elegans Hypothetical pr... 31 0.51
X94702-1|CAA64363.1| 331|Caenorhabditis elegans pes-2 protein. 31 0.51
X94701-1|CAA64362.1| 331|Caenorhabditis elegans pes-2 protein. 31 0.51
AF016449-17|AAG24005.1| 306|Caenorhabditis elegans Hypothetical... 29 2.0
Z83116-9|CAD89748.1| 374|Caenorhabditis elegans Hypothetical pr... 28 4.7
>U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical
protein C07A12.7a protein.
Length = 437
Score = 229 bits (561), Expect = 9e-61
Identities = 104/165 (63%), Positives = 130/165 (78%), Gaps = 1/165 (0%)
Frame = +3
Query: 84 NPFSTPVGQKIEQATDG-ALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKN 260
NPF+TPVG+KIE ATD L +ENW LNMEICD IN + DGP+DA++A++KRL + KN
Sbjct: 33 NPFATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKN 92
Query: 261 YTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCW 440
VVMYTLTVLET VKNC FHVLVCNK+F+ +L+KLIGPK D P ++Q++VLSLIQ W
Sbjct: 93 NAVVMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLIGPKFDAPQIIQERVLSLIQAW 152
Query: 441 ADAFQNQAELQGVGQVYNELRTKGVEFPMTDLDAMAPIFTPQRSV 575
ADAF+ L GV Q Y++L++KGVEFP DLD +API TP+R+V
Sbjct: 153 ADAFRGDPTLAGVVQSYDDLKSKGVEFPAADLDTLAPIKTPKRTV 197
>U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical
protein C07A12.7b protein.
Length = 403
Score = 228 bits (557), Expect = 3e-60
Identities = 103/164 (62%), Positives = 129/164 (78%), Gaps = 1/164 (0%)
Frame = +3
Query: 84 NPFSTPVGQKIEQATDG-ALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKN 260
NPF+TPVG+KIE ATD L +ENW LNMEICD IN + DGP+DA++A++KRL + KN
Sbjct: 33 NPFATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKN 92
Query: 261 YTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCW 440
VVMYTLTVLET VKNC FHVLVCNK+F+ +L+KLIGPK D P ++Q++VLSLIQ W
Sbjct: 93 NAVVMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLIGPKFDAPQIIQERVLSLIQAW 152
Query: 441 ADAFQNQAELQGVGQVYNELRTKGVEFPMTDLDAMAPIFTPQRS 572
ADAF+ L GV Q Y++L++KGVEFP DLD +API TP+R+
Sbjct: 153 ADAFRGDPTLAGVVQSYDDLKSKGVEFPAADLDTLAPIKTPKRT 196
>U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte growth
factor-regulatedtk substrate (hrs) family protein 1
protein.
Length = 729
Score = 94.3 bits (224), Expect = 6e-20
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Frame = +3
Query: 93 STPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVV 272
+T + ++QATD L NW + D+I S K +++AIRKR+ +N VV
Sbjct: 2 ATKFQRVLDQATDSTLVEPNWEGIILCTDMIRSGEVPAKPSLQAIRKRMQH---ENPHVV 58
Query: 273 MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAF 452
+TL VL+ CVKNCG H V +EF+ + L+ + V++K L ++QCWA AF
Sbjct: 59 NHTLLVLDACVKNCGHKVHAEVATREFMEDFKNLV--TENKYDEVKNKSLEMLQCWATAF 116
Query: 453 QNQAELQGVGQVYNELRTKGVEFP-MTDLDAM 545
N+ E + V +N ++ G +FP + + DAM
Sbjct: 117 ANKPEYKMVVDTHNLMKLAGFDFPSLKEADAM 148
>U97407-8|AAN84851.1| 397|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform b protein.
Length = 397
Score = 62.5 bits (145), Expect = 2e-10
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Frame = +3
Query: 147 ENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTVLETCVKNCGKPF 326
ENW + CD+IN+ +G K IK++RKRL ++ VV+ ++VL++C NC + F
Sbjct: 19 ENWEGILAFCDMINNDFEGSKTGIKSLRKRLN---NRDPHVVLLAISVLDSCWANCEERF 75
Query: 327 HVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADA-FQNQAELQGVGQVYNELR 503
V + +FI+EL L V +K+ +Q W D + + L + ++ L
Sbjct: 76 RKEVSSAQFINELKALC---TSSQRQVAEKMRLTVQKWVDTECKTEQSLSLIVTLHKNLV 132
Query: 504 TKGVEFPMTD 533
G F + D
Sbjct: 133 ADGYSFVVDD 142
>U97407-7|AAB52480.2| 457|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform a protein.
Length = 457
Score = 62.5 bits (145), Expect = 2e-10
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Frame = +3
Query: 147 ENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTVLETCVKNCGKPF 326
ENW + CD+IN+ +G K IK++RKRL ++ VV+ ++VL++C NC + F
Sbjct: 27 ENWEGILAFCDMINNDFEGSKTGIKSLRKRLN---NRDPHVVLLAISVLDSCWANCEERF 83
Query: 327 HVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADA-FQNQAELQGVGQVYNELR 503
V + +FI+EL L V +K+ +Q W D + + L + ++ L
Sbjct: 84 RKEVSSAQFINELKALC---TSSQRQVAEKMRLTVQKWVDTECKTEQSLSLIVTLHKNLV 140
Query: 504 TKGVEFPMTD 533
G F + D
Sbjct: 141 ADGYSFVVDD 150
>Z68014-4|CAA92026.2| 588|Caenorhabditis elegans Hypothetical
protein W04G3.4 protein.
Length = 588
Score = 37.5 bits (83), Expect = 0.008
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Frame = +3
Query: 99 PVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMY 278
P+ + +ATD + E ++ II S P A+ A+ + + M
Sbjct: 8 PIDYWVCRATDRFIGDEERIKALDF--IIESIYKQPASALLAVDLFSHKLSSPSQEEAML 65
Query: 279 TLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPK-NDPPT--VVQDKVLSLIQCWADA 449
T+ L+ V+N G+ H +F++ELV+LI PK N T ++ +++ L+ W +
Sbjct: 66 TIRALDYLVRNGGEKVHERCGRYKFLNELVRLIAPKYNGKLTSDALKTEIIKLLFIWQLS 125
Query: 450 FQNQAELQGVGQVYNELR 503
++ + + QVY L+
Sbjct: 126 IKHIPKYK---QVYESLK 140
>Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical
protein C15C8.2 protein.
Length = 636
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 489 YNELRTKGVEFPMTDLDAMAPIFTPQRSVPDGVEQXGSPHRSVLP 623
YN+++ VE PM ++ P+FTP+ S P E S H S+LP
Sbjct: 485 YNQIK---VEIPMRPINTQIPLFTPESSSP---ESSASLHTSLLP 523
>AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative
transcription factor C15C8.2protein.
Length = 636
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 489 YNELRTKGVEFPMTDLDAMAPIFTPQRSVPDGVEQXGSPHRSVLP 623
YN+++ VE PM ++ P+FTP+ S P E S H S+LP
Sbjct: 485 YNQIK---VEIPMRPINTQIPLFTPESSSP---ESSASLHTSLLP 523
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 489 YNELRTKGVEFPMTDLDAMAPIFTPQRSVPDGVEQXGSPHRSVLP 623
YN+++ VE PM ++ P+FTP+ S P E S H S+LP
Sbjct: 485 YNQIK---VEIPMRPINTQIPLFTPESSSP---ESSASLHTSLLP 523
>Z81552-2|CAB04485.1| 331|Caenorhabditis elegans Hypothetical
protein F56G4.3 protein.
Length = 331
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 436 HWMRLNTLSCTTVGGSFLGPINFTNSDINSLLQTXTWNGFPQFF 305
HWM ++TL T L FTN DIN ++ F + F
Sbjct: 230 HWMTIDTLKDFTACSVILYDCKFTNKDINEFIKLWKNKEFERIF 273
>Z81552-1|CAB04484.1| 331|Caenorhabditis elegans Hypothetical
protein F56G4.2 protein.
Length = 331
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 436 HWMRLNTLSCTTVGGSFLGPINFTNSDINSLLQTXTWNGFPQFF 305
HWM ++TL T L FTN DIN ++ F + F
Sbjct: 230 HWMTIDTLKDFTACSVILYDCKFTNKDINEFIKLWKNKEFERIF 273
>X94702-1|CAA64363.1| 331|Caenorhabditis elegans pes-2 protein.
Length = 331
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 436 HWMRLNTLSCTTVGGSFLGPINFTNSDINSLLQTXTWNGFPQFF 305
HWM ++TL T L FTN DIN ++ F + F
Sbjct: 230 HWMTIDTLKDFTACSVILYDCKFTNKDINEFIKLWKNKEFERIF 273
>X94701-1|CAA64362.1| 331|Caenorhabditis elegans pes-2 protein.
Length = 331
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 436 HWMRLNTLSCTTVGGSFLGPINFTNSDINSLLQTXTWNGFPQFF 305
HWM ++TL T L FTN DIN ++ F + F
Sbjct: 230 HWMTIDTLKDFTACSVILYDCKFTNKDINEFIKLWKNKEFERIF 273
>AF016449-17|AAG24005.1| 306|Caenorhabditis elegans Hypothetical
protein C50H11.17 protein.
Length = 306
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = -3
Query: 488 HLTDSL*FSLVLEGIGPTLDEAQYFVLHHRRRIIFGANQFYQL*YKFLIADEXMERLSTV 309
H DSL LV + PT E YF H + + N Y+ + L +E R
Sbjct: 189 HKNDSLFHELVSKRCDPTCMETSYFSEDHTNKTVELCNVMYEDAFN-LCLNEVKPREDAN 247
Query: 308 FYACFQDSQRVHH 270
+ CF D R H+
Sbjct: 248 SFPCFIDG-RFHN 259
>Z83116-9|CAD89748.1| 374|Caenorhabditis elegans Hypothetical
protein M01B2.11 protein.
Length = 374
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = +1
Query: 94 LRRWVKKLNKPQMAHY 141
++RWV+K+NKP++A Y
Sbjct: 156 MKRWVEKINKPRVAIY 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,472,939
Number of Sequences: 27780
Number of extensions: 385917
Number of successful extensions: 931
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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