Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M03
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0296 + 24216284-24216428,24216631-24216745,24217321-242174... 119 3e-27
02_04_0498 + 23480930-23481186,23483615-23483705,23483790-234839... 116 3e-26
03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-45... 34 0.17
01_01_0012 + 71903-72935,73468-73981,74619-76008 31 1.2
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799... 30 2.8
10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766 29 6.5
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549... 28 8.6
>04_04_0296 +
24216284-24216428,24216631-24216745,24217321-24217411,
24217495-24217640,24217745-24217964,24218037-24218145,
24218273-24218441,24218546-24218720
Length = 389
Score = 119 bits (287), Expect = 3e-27
Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 12/233 (5%)
Frame = +3
Query: 162 EGKTPEYMALAGIKFKLSLPEFKD--NIQLKEQLLNGIKAGHMAPYYKEVCNDLGWAFDQ 335
EGK ++ LA F LS P+ D + L+ +L +K+ MA Y+ + D
Sbjct: 8 EGKQQPHLVLAHKLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDA 67
Query: 336 KLYDDMTKENQDRLSKFEED--DSETPVWQDRLD--------YLCSVGDKETATALATSK 485
L +M ++ + K +E D+E + + + Y VG+KE A
Sbjct: 68 ALLAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALE-QLKV 126
Query: 486 YEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEA 665
E T+ +++D +F +I +F+ + + K+I+KA +L ++GGDW +N+LK YE
Sbjct: 127 TEGKTVAVGQKMDLVFHTLQIGFFY-MDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEG 185
Query: 666 IYCLAVRDYSHAAELFIDCVSTFESYELVDFGTIIQYCVLACALALERHALQS 824
+YC+A R++ AA LF+D +STF +YEL + T I Y VL ++L+R +L++
Sbjct: 186 LYCMATRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSVISLDRVSLKA 238
>02_04_0498 +
23480930-23481186,23483615-23483705,23483790-23483935,
23484029-23484248,23484314-23484422,23484518-23484686,
23484801-23484975
Length = 388
Score = 116 bits (278), Expect = 3e-26
Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 12/232 (5%)
Frame = +3
Query: 162 EGKTPEYMALAGIKFKLSLPEFKD--NIQLKEQLLNGIKAGHMAPYYKEVC-------ND 314
E K ++ LA F LS P+ D + L+ L+ +K+ MAP ++ + +D
Sbjct: 7 EAKQERHLVLAHKLFLLSHPDLDDLAKVALRSDALDAVKSDGMAPLFESLAAAGVLEPDD 66
Query: 315 LGWAFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLD---YLCSVGDKETATALATSK 485
A + D+ ++ ++++ EE+ E+ V + L Y VG+KE A
Sbjct: 67 ALLAEMRARIDEEVRKLDEKIADAEENLGESEVREAHLAKSLYFMRVGEKEKALE-QLKV 125
Query: 486 YEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEA 665
E T+ +++D +F +I FH + + K+I+KA L ++GGDW +N+LK YE
Sbjct: 126 TEGKTVAVGQKMDLVFYTLQIGLFH-MDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEG 184
Query: 666 IYCLAVRDYSHAAELFIDCVSTFESYELVDFGTIIQYCVLACALALERHALQ 821
+Y +A R++ AA LF+D +STF +YEL + T + Y V+ + L+R +L+
Sbjct: 185 LYFMATRNFKKAASLFLDSISTFTTYELFPYDTFVFYTVITSIITLDRVSLK 236
>03_01_0052 -
450258-450285,450345-450457,450540-450746,451021-451080,
451281-451376,451495-451551,451786-451845,452774-452853,
454265-454367,454530-454571
Length = 281
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 709 YSLTVCQLLNLMNWLISVQSSSTVFSLVPWPLKGMLYNLLYAGKVLQYS 855
YS + Q + +N I +SS + L P K ++YNL Y +L YS
Sbjct: 38 YSTNMTQAMGAVNSCIPSLTSSDILELTSVPFKNIVYNLAYMFWILGYS 86
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 330 DQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYEDSTLTT 509
D+ L + + D + E E + +DR D L SVG K +L +E T
Sbjct: 735 DEMLNSNSKRSKHDAALECHERKDEDHIEEDRRD-LDSVGSKSEKRSLGNGDHEKQNHDT 793
Query: 510 NRRLD 524
NR+ D
Sbjct: 794 NRKTD 798
>06_02_0364 +
15178583-15178881,15179652-15179723,15179853-15179917,
15180890-15180934,15182493-15183170,15183376-15183410,
15183647-15183736,15183896-15183985,15184164-15184262,
15184938-15185013,15185473-15185588
Length = 554
Score = 29.9 bits (64), Expect = 2.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 192 PMPCIQVFFPPLIAPFSIDCNASIY 118
P PC V P + PFS+ C + Y
Sbjct: 471 PFPCCHVIVYPFLVPFSLQCEVTNY 495
>10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766
Length = 943
Score = 28.7 bits (61), Expect = 6.5
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Frame = +3
Query: 138 QLKMELSAEGKTPEYMAL----AGIKFKLSLPEF--KDNIQLKEQLLNGIKAGHMAPYYK 299
Q ++E AE T L +G++ +L E K+++ EQLL+G+K
Sbjct: 223 QSELETKAEEATAIVAKLESEASGLRAELQNAEASRKEDVGRAEQLLHGLKVDIAYAKRA 282
Query: 300 EVCNDLG---W-----AFDQKLYD--DMTKENQDRLSKFEEDDSETP-VWQDRLDYLCSV 446
E +L W + +L++ + K N+D L E + Q + +
Sbjct: 283 EADANLAAQEWKTKAESLQARLHELSSLNKSNEDSLQSLTSSFDECKSMLQHEQSQVVQL 342
Query: 447 GDKETATALATSKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELV 614
+K ++ +Y++ L TNRRLD + K +N+AH+ V
Sbjct: 343 KEKVSSLEKEAREYKECFLETNRRLDVATKESHQLQATIDRLTSQHKLLNEAHQQV 398
>11_04_0430 +
17653553-17654285,17654305-17654627,17654795-17654921,
17655123-17655338,17655463-17655494
Length = 476
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +3
Query: 321 WAFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGD 452
W D++ DD+ +E +R+ + E +++E V Q+++ L +VG+
Sbjct: 388 WDGDEE--DDVLEEVYERVEREEMEENEAGVQQEKIVQLANVGE 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,065,153
Number of Sequences: 37544
Number of extensions: 405955
Number of successful extensions: 1036
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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