Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_M03
(881 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35688| Best HMM Match : COX2_TM (HMM E-Value=8.8) 93 3e-19
SB_38087| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 9e-08
SB_38693| Best HMM Match : DIE2_ALG10 (HMM E-Value=0.18) 31 0.93
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27) 29 3.8
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07) 28 8.7
>SB_35688| Best HMM Match : COX2_TM (HMM E-Value=8.8)
Length = 159
Score = 93.1 bits (221), Expect = 3e-19
Identities = 45/112 (40%), Positives = 69/112 (61%)
Frame = +3
Query: 474 ATSKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLK 653
A K D + +LD +F RI F+ N + K I+KA EL+++GGDW RN+LK
Sbjct: 6 AFRKSYDKAVALGYKLDILFYRIRIGLFYLDN-DMITKNISKAKELIEEGGDWDRRNRLK 64
Query: 654 AYEAIYCLAVRDYSHAAELFIDCVSTFESYELVDFGTIIQYCVLACALALER 809
Y+ IY +++RD+ AA F++ +STF SYEL+D+ T + +L ++LER
Sbjct: 65 VYQGIYFMSIRDFKAAASNFLESISTFTSYELMDYQTFVTNTILTSMISLER 116
>SB_38087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 54.8 bits (126), Expect = 9e-08
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Frame = +3
Query: 153 LSAEG--KTPEYMALAGIKFKLSLPEFKDNIQLKEQLLNGIKAGHMAPYYKEVCNDLGWA 326
L EG K P + LA ++F L P+ D + K+ LL+ +KA MAP+Y+E+C + W
Sbjct: 6 LEEEGLPKNPN-LELAQLRFVLVNPDGVDKEKAKKMLLDVVKAKDMAPFYEELCAEFKWP 64
Query: 327 FDQKLYDDMTKENQDRLSKFEE 392
D+ L + M ++N ++L + ++
Sbjct: 65 VDKPLLEKMKQKNTEKLEELDK 86
>SB_38693| Best HMM Match : DIE2_ALG10 (HMM E-Value=0.18)
Length = 583
Score = 31.5 bits (68), Expect = 0.93
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 129 HYNQLKMELSAEGKTPEYMALAGIKFKLSLPEFKDNIQLKEQLLNGIKAGHMAPYYKEVC 308
H+ + S E ++ L G + + FKDN QL +Q+ + G + Y +
Sbjct: 268 HFRRKHTVTSEECIAGGFVVLVGFLYYYFMQLFKDNPQLLQQIGLAFEGGEIRQYIIIIA 327
Query: 309 NDLGW 323
+DLG+
Sbjct: 328 SDLGY 332
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 29.9 bits (64), Expect = 2.9
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Frame = +3
Query: 135 NQLKMELSAEGKTPEY--MALAGIKFKLSLPEFKDNIQLKEQLLNGIKAGHMAPYYKEVC 308
N+L+ EL++ + P+ + A I ++ L ++KD + + +K A +K +
Sbjct: 2573 NKLEAELTSMKRAPQADDKSTATIHLEVELSDWKDQASSLQSEVAQLKKDKAAAMHKVID 2632
Query: 309 NDLGWA-FDQKLY--DDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALAT 479
++ +LY +D NQD + +++++ V +RL SV ETA +
Sbjct: 2633 SEEQMIQLRSRLYKTEDSLVRNQDTVKLLSKENTDLRVEIERLRSRLSVYASETAKEIVD 2692
Query: 480 SKYE 491
E
Sbjct: 2693 GNGE 2696
>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
Length = 1068
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 330 DQKLYDDMTKENQD-RLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYEDST 500
D LY D T E R K ++ +++ W+ +D+L + + T + YED T
Sbjct: 771 DPFLYHDDTLELMTHRWIKLDKSENQDAQWKRAIDFLSEIPELHYMTQIVLMLYEDPT 828
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 207 KLSLPEFKDNIQLKEQLLNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKF 386
K+ P+ +D+ L +K+ H P VC G FD + EN R++K
Sbjct: 675 KVRCPQCRDSFDHPRVLSMHLKSHHSEP----VCLVCGIKFDHDKILKLHMENYHRINKG 730
Query: 387 EEDDSETP 410
+ + ETP
Sbjct: 731 QSNSPETP 738
>SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1450
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 129 HYNQLKMELSAEGKTPEYMALAGIKFKLSLPEFKDNIQLKEQLLNGIKAG 278
H + K E S EG+ + G+ ++SLP + N LK+QL I +G
Sbjct: 84 HRFKWKHEDSQEGRRTRRKKMRGLGGEISLPTPETNDSLKQQLRAKIASG 133
>SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)
Length = 642
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 723 VSTFESYELVDFGTIIQYCVLACALALERH 812
V+T E++ GT++ Y +A ++ LERH
Sbjct: 334 VNTSNLVEMLSIGTMLAYIAIAISVLLERH 363
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,538,401
Number of Sequences: 59808
Number of extensions: 485809
Number of successful extensions: 1306
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -