Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_M01
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm rec...    28   7.8  
AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm rec...    28   7.8  

>AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform b protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +3

Query: 552 LFLSI*KQFIIQHLYFFVTNILINFHLLYYILCKNYTLLTTIRNIIMW 695
           LF +I  +F IQ L  F+ +I+ NF L+Y IL ++   + T + ++++
Sbjct: 2   LFAAI--KFTIQ-LVSFIVSIIFNFTLIYLILTRSPKKMGTYKYLLIY 46


>AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform a protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +3

Query: 552 LFLSI*KQFIIQHLYFFVTNILINFHLLYYILCKNYTLLTTIRNIIMW 695
           LF +I  +F IQ L  F+ +I+ NF L+Y IL ++   + T + ++++
Sbjct: 2   LFAAI--KFTIQ-LVSFIVSIIFNFTLIYLILTRSPKKMGTYKYLLIY 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,636,167
Number of Sequences: 27780
Number of extensions: 284470
Number of successful extensions: 653
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)