Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L24
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 199 4e-52
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 36 0.007
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 29 0.78
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 28 1.4
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 27 2.4
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 2.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 3.1
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 3.1
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 5.5
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 26 5.5
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 26 5.5
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 26 5.5
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 26 7.2
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 25 9.6
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 9.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.6
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 25 9.6
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 199 bits (485), Expect = 4e-52
Identities = 93/207 (44%), Positives = 143/207 (69%), Gaps = 1/207 (0%)
Frame = +2
Query: 155 RPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLELCVDLRKS 334
+PEN L+ A+E + LD+ + AL +L E K+ + N LEPIM +++ELCV LRK
Sbjct: 7 KPENVLRLADELIALDQHSSALQSLHETIVLKR-SRNAQGFSLEPIMMRFIELCVHLRKG 65
Query: 335 HVAKEGLFQYRNMFQSVNVGSLEQVIRGYLRMAEERTETARALSTQAVID-TDDLDNLAT 511
+AKEGL+ Y+N Q+ +V ++E V++ ++ +A +R + A+ + + ++ DDL+ T
Sbjct: 66 KIAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQEKADKISVEYVDDLEATET 125
Query: 512 PESILLSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETLYHDIARMAFQ 691
PESI++S VSG+ ++ R+DR ++TPW+KFLW++Y L++LR NA +E +Y IA AFQ
Sbjct: 126 PESIMMSLVSGDLSKSRTDRALVTPWLKFLWDAYRTVLDILRNNARLEVMYQLIANSAFQ 185
Query: 692 FCLKYSRKTEFRKLCDKLRKHLEDICK 772
FCLKY RKTEFR+LC+ LR HL + K
Sbjct: 186 FCLKYQRKTEFRRLCELLRSHLGNASK 212
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 35.9 bits (79), Expect = 0.007
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 617 QCLELLRTNAHVETLYHDIARMAFQFCLKYSRKTEFRKLCDKLRKHLEDICK 772
+ +L+RTN HD++R+ Q C+K+ K + +C +L D+CK
Sbjct: 157 ELFDLIRTNVKQLVFKHDMSRVV-QTCVKFGSKQQRETICAELAGSYVDLCK 207
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.78
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = -1
Query: 561 RSWASSPDTALRSMLSGVARLSRSSVSMTACVDKALAVSVRSSAI 427
++WASS D ++S++SG ++S + CV ++ + ++AI
Sbjct: 889 KAWASSRDL-VKSLISGEVQVSSFDLESAKCVSYSIVSELENNAI 932
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 410 IRGYLRMAEERTETARALSTQAVIDTDDLDNLATPESILLSAVSGEDAQDRSDRTIL 580
+ YL+ E + T A+S Q + DD++ L I S + D S +++L
Sbjct: 514 LNNYLKTLAEASATDSAISQQYALVKDDVETLCNSSKISALLESSISSTDNSGQSLL 570
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 175 FKGIFRSL-TVSRHFLYITFYFINTISSILCRFRRENRIPPAP 50
F I+R L V+ FL + YFI I IL ++++PP P
Sbjct: 584 FSNIYRILGKVTYKFLKLVQYFIINIFDILSPAGPDSQLPPEP 626
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 150 PYRAIFFISLSTSLTQFRRFYVGLGEKTEFLQHRPHTRHVKQNGGTIG 7
P A +++ S R F LGEK L H HTR + ++G
Sbjct: 934 PIDAKYYLENQLSKPLLRIFEPILGEKASSLLHGDHTRTISMAAPSVG 981
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = -1
Query: 213 LAGLSKSMNSLARLRAFSGL*PYRAIFFISLSTSLTQFRRFYVGLGEKTEF 61
L GLS ++ + + +F + P + +F+ + ++ ++G+ EKT F
Sbjct: 687 LVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPF 737
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 546 SPDTALRSMLSGVARLSRSSVSMTACVDKALAVSVR 439
SPD A+R SG+ R R + D ALA+++R
Sbjct: 547 SPDIAMRLFQSGILRKLRDLQEQYSRTDVALAMTLR 582
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 573 VLSDRSWASSPDTALRSMLSGVARLSRSSVSMTACVDKALAVSVRSSAI 427
VLS+R W + A+ S+++ S S VS++ A + SV +S +
Sbjct: 271 VLSNREWEAGKIDAMNSLIAQNLHTSASQVSLSPMASTA-SSSVTNSPV 318
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 578 VLFCQIGPGHLHLTLHSGVCSPGLQGYPDH 489
VL C+IG ++ G+ +P L+ P+H
Sbjct: 782 VLLCKIGNAAVNRVYEKGLSNPSLKPKPEH 811
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 600 FGNPTANAWSSFVRMLMW 653
FG P A W+ F++ L W
Sbjct: 170 FGTPDAEGWNEFLKCLEW 187
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 5.5
Identities = 33/132 (25%), Positives = 56/132 (42%)
Frame = +2
Query: 185 EFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLELCVDLRKSHVAKEGLFQY 364
E++ +D+P LD QE+ + K AY + + I+ Y L+ + +GL
Sbjct: 209 EYIQIDEPILTLDLPQEILASYKEAYETLGKIGKLILTTYFG---SLQSNADVLKGL-PI 264
Query: 365 RNMFQSVNVGSLEQVIRGYLRMAEERTETARALSTQAVIDTDDLDNLATPESILLSAVSG 544
+ V V + E + R + E + + +S + + TD A E +SAV
Sbjct: 265 AGVHVDV-VRAPENLDRALAVLGENQIISVGVVSGRNIWKTDFQKATAIIEK-AISAVGS 322
Query: 545 EDAQDRSDRTIL 580
E Q S +IL
Sbjct: 323 ERVQVASSSSIL 334
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 392 GSLEQVIRGYLRMAEERTETARALSTQAVIDTDDLDNL 505
GSLE + + Y+ +E + L +++D D++NL
Sbjct: 527 GSLETIEKTYVDTVDEFGNPVKVLIDNSMLDLTDMENL 564
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 401 EQVIRGYLRMAEERTETARALSTQAVIDTDDLDNLATPESILLSAVSGEDAQDRSDR 571
+ ++R Y +A ER E A LS DD+ +++ +LL + GE + DR
Sbjct: 65 KDLLRSYENVAMERKECANQLSYWGEDCDDDISDISDKLGVLLYEI-GELEEHMVDR 120
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 455 RALSTQAVIDTDDLDNLATPESILLSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELL 634
R +S+ V + + L + VS + + +S +++ P K WE CLE+L
Sbjct: 445 REISSFLVTNAQHPEALRNMGMVTQLYVSVDASTKQSLKSVDRPLFKDFWERMLTCLEIL 504
Query: 635 R 637
R
Sbjct: 505 R 505
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +2
Query: 512 PESILLSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETL 661
P + L V+GE D S + + +K + + +C+ L + N E +
Sbjct: 222 PTTATLDCVNGELYNDESAKELFRCIIKECVDIFFKCIPLFKNNEEAEKI 271
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +2
Query: 284 EPIMFKYLELCVD------LRKSHVAKEGLFQYRNMFQS 382
EP KY+E+CVD K+ + K L Y+ F++
Sbjct: 189 EPTDMKYVEVCVDSITSLSFDKTDMTKPNLSSYKTFFET 227
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 686 FQFCLKYSRKTEFRKLCDKLRKHLEDI 766
F F Y+ EF LC L + LED+
Sbjct: 640 FVFICTYATDDEFAPLCSTLGQRLEDL 666
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = +3
Query: 159 RKMPLNGPMSSWIWTNQQGP*TPYRKFSVTKNGPTTGPNLS*NQSCSNTWNFALIYVN 332
+K+ G + +W+ G PY + NG + +LS + +W + L +N
Sbjct: 630 KKLEEEGAVDAWVMALPNGVCKPYVDALTSANGKSVIVDLSADYRFEPSWQYGLPELN 687
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,756,852
Number of Sequences: 5004
Number of extensions: 86321
Number of successful extensions: 243
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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