Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L24
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 202 2e-52
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 32 0.62
01_01_0853 + 6658237-6658531,6658683-6658823,6658969-6659238,665... 30 1.9
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207... 30 2.5
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 4.4
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 28 7.6
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 202 bits (494), Expect = 2e-52
Identities = 100/208 (48%), Positives = 141/208 (67%), Gaps = 2/208 (0%)
Frame = +2
Query: 155 RPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLELCVDLRKS 334
+PENALKRA E + + + AL L ++ +K++ +W + LE IM KY+ELCVDLRK
Sbjct: 6 KPENALKRAEELIHVGQKQAALQALHDLITSKRYR-SWQKP-LERIMMKYVELCVDLRKG 63
Query: 335 HVAKEGLFQYRNMFQSVNVGSLEQVIRGYLRMAEERTETAR--ALSTQAVIDTDDLDNLA 508
AK+GL QYR + Q VNV SLE+VI+ +++++ E+ E AR A + + +D +DL+
Sbjct: 64 RFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEQARNQAQALEDALDVEDLEADK 123
Query: 509 TPESILLSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETLYHDIARMAF 688
PE ++LS VSGE +DRSDR +TPW KFLWE+Y LE+LR N+ +E LY A AF
Sbjct: 124 RPEDLMLSYVSGEKGKDRSDREHVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHKAF 183
Query: 689 QFCLKYSRKTEFRKLCDKLRKHLEDICK 772
QFC +Y R TEFR+LC+ +R HL ++ K
Sbjct: 184 QFCKQYKRTTEFRRLCEIIRNHLANLNK 211
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 31.9 bits (69), Expect = 0.62
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Frame = +2
Query: 482 DTDDLDNLATPESILLSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAH-VET 658
D L+ + ++ S +DA RS + + V F+W + + + LRT A +
Sbjct: 365 DASVLERYSDASCNSIAVFSDDDALSRSMKEVKNDKVSFVWTQFSKLISYLRTRAQDPDK 424
Query: 659 LYHDIAR-MAFQFC-LKYSRKTEFRKLCDKLRKHL 757
+ +A +A Q C K ++K + + C +L++ L
Sbjct: 425 VKSCVAEAIALQTCDRKTAQKRKKHQTCPELKEIL 459
>01_01_0853 +
6658237-6658531,6658683-6658823,6658969-6659238,
6659324-6659463,6659563-6659709,6660739-6661320
Length = 524
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 607 FPKEFHPWCEYCSVRSVLGIFT*HCTQE-YALRGCKVIQIISVYD 476
F F+PW EY V +VL HC E AL GC +I + Y+
Sbjct: 295 FKHFFYPWAEYVKVGNVLR----HCAYEVMALHGCVHSEIQAPYN 335
>04_04_1631 -
34919197-34919205,34919865-34920204,34920418-34920726,
34920781-34921307,34921700-34921852,34922102-34922186,
34922360-34922364
Length = 475
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +2
Query: 149 GQRPENALKRANEFMDLDK-PARALDTLQEVFRNKKWAYNWSESVLEPI-MFKYLELCVD 322
G+ PE +++AN++ L K P + EV+ K A WS+S P + E C
Sbjct: 124 GEHPEAWIRKANKYFALTKTPEEEKVLVAEVYITSK-ADQWSDSYDIPTETLSWPEFCTI 182
Query: 323 LRKSHVAKEGLFQYRNMFQSV-NVGSLEQVI 412
+ K AK + + ++F+++ GS+E I
Sbjct: 183 VCKRFAAKSKV-EIIDIFRNLKQYGSVESYI 212
>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 260 YNWSESVLEPIMFKYLEL--CVDLRKSHVAKEGLFQ 361
YNWSE+ + I K+L++ C L + HV E L +
Sbjct: 1219 YNWSEAFSQLIALKHLDISKCPSLLQRHVMSEFLHE 1254
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +3
Query: 177 GPMSSWIWTNQQGP*TPYRKFSVTKNGPTTGPNLS*NQSCSNTWNFALIYVNL 335
G +SW T Q P+R F V P TG SNTWN + ++ L
Sbjct: 733 GQFASWPITGQTAL-LPFRFFRVMLTAPATG--------VSNTWNLCICFLEL 776
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,927,593
Number of Sequences: 37544
Number of extensions: 591156
Number of successful extensions: 1444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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