Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L24
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)          236   1e-62
SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7)                  33   0.21 
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)            31   1.1  
SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)             31   1.1  
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  29   3.4  
SB_59651| Best HMM Match : UPF0089 (HMM E-Value=5.8e-06)               29   4.4  
SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034)         29   4.4  
SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21)                 29   5.9  
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  29   5.9  
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_29844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)                 28   7.7  
SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)                    28   7.7  

>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score =  236 bits (578), Expect = 1e-62
 Identities = 116/213 (54%), Positives = 149/213 (69%), Gaps = 7/213 (3%)
 Frame = +2

Query: 188 FMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLELCVDLRKSHVAKEGLFQYR 367
           F+++ K   ALD L +V ++KK    W   + EPI+FKYLELCVDLR+SHVAKEGL+QY+
Sbjct: 2   FIEVGKKEPALDALYDVIKSKKHR-TWQNKIHEPILFKYLELCVDLRRSHVAKEGLYQYK 60

Query: 368 NMFQSVNVGSLEQVIRGYLRMAEERTETARALSTQAV-------IDTDDLDNLATPESIL 526
            + Q VN+ SLE VIR +L++AE R   A+  S +         +D +DLD + TPES+L
Sbjct: 61  LICQQVNIASLEDVIRYFLKLAESRAVEAQEDSRKEASAELDEDVDIEDLDQIQTPESLL 120

Query: 527 LSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETLYHDIARMAFQFCLKY 706
           LS VSGED QDR+DR  LTPWVKFLWE+Y   LELLR N  VE LYH+ A+ AF+FCLKY
Sbjct: 121 LSFVSGEDTQDRTDRVKLTPWVKFLWEAYRNVLELLRNNVRVEKLYHETAQQAFKFCLKY 180

Query: 707 SRKTEFRKLCDKLRKHLEDICKPTVQTGNVSIS 805
           +R+TEFRKLCD LR HL    K   Q  +V+++
Sbjct: 181 TRRTEFRKLCDNLRNHLNVTLKHQGQPNSVNLN 213


>SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7)
          Length = 152

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +2

Query: 116 VESDIKKMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIM 295
           VE+D K++ +     E  LK   E  +LD   +A D +QE  ++   A N +   L+ I 
Sbjct: 78  VENDAKELQKNMDEEEQELKTEEE-KELDDEKQARDKIQEAIKHNSEAMNKARKFLQDIE 136

Query: 296 FKYLELCVDLRKSHV 340
               +   D+ KS+V
Sbjct: 137 EGIEKFHQDIEKSNV 151


>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +2

Query: 152 QRPENALKRANEFMDLDKPARALDTLQEVFRNKKWA----YNWSESVLEPIMFKYLELCV 319
           QRP         F  L  P RALD L E F+ +  A     N+ E +LE + F+ L L +
Sbjct: 547 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 606

Query: 320 DLRKSHVAKEGLFQYR 367
              K  V  +G F  R
Sbjct: 607 ---KGDVIIQGDFNAR 619


>SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)
          Length = 1163

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +2

Query: 152 QRPENALKRANEFMDLDKPARALDTLQEVFRNKKWA----YNWSESVLEPIMFKYLELCV 319
           QRP         F  L  P RALD L E F+ +  A     N+ E +LE + F+ L L +
Sbjct: 670 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 729

Query: 320 DLRKSHVAKEGLFQYR 367
              K  V  +G F  R
Sbjct: 730 ---KGDVIIQGDFNAR 742


>SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)
          Length = 891

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +2

Query: 152 QRPENALKRANEFMDLDKPARALDTLQEVFRNKKWA----YNWSESVLEPIMFKYLELCV 319
           QRP         F  L  P RALD L E F+ +  A     N+ E +LE + F+ L L +
Sbjct: 498 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 557

Query: 320 DLRKSHVAKEGLFQYR 367
              K  V  +G F  R
Sbjct: 558 ---KGDVIIQGDFNAR 570


>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = -1

Query: 312 SSKYLNMIGSRTDSDQL*AHFLLRKTSCKVSRALAGLSKSMNSLARLRAFSGL*PYRAIF 133
           SS  + M  ++T +DQ    F+++     V   +AGL KS  S   + + S L      F
Sbjct: 106 SSPSIGMSLAKTSADQAPKSFVIKGGEFDVPEEMAGLLKSDPSGGSVISQSTLTVANPFF 165

Query: 132 FISLSTSLTQFRRFYVGLGEKTE 64
           + + S S T+ R   V L  K E
Sbjct: 166 YSNDSNSTTRVRSPVVSLTYKME 188


>SB_59651| Best HMM Match : UPF0089 (HMM E-Value=5.8e-06)
          Length = 425

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 473 PASIKPWLFLCVPLPYGD 420
           P    PW F CVP  YGD
Sbjct: 158 PEGKSPWYFCCVPTDYGD 175


>SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034)
          Length = 629

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -1

Query: 606 SQRNFTHGVSIVLSDRSWASSPDTALRSMLSGVARLSRSSVSMTACVDKALA--VSVRSS 433
           S  NF+   S+ ++     +S  T   S++S +ARL+ S+   T       +    ++S 
Sbjct: 86  SMTNFSTSKSMSVATVQLVTSTSTPASSLISNIARLASSAGGTTTAASSGTSKPFPIQSL 145

Query: 432 AIRR*PLITCSKDPTL 385
           A      IT S+D TL
Sbjct: 146 ATETVGAITKSEDTTL 161


>SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21)
          Length = 387

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +2

Query: 134 KMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLEL 313
           ++  Y  RP     R      L+K  + LD ++EV     W    S+ V+ P   + + L
Sbjct: 13  RITHYNIRPIPFGLRGKVNQKLEK-LKNLDIIEEVAGPTPWV---SQVVIVPKPSREIRL 68

Query: 314 CVDLRKSHVAKEGLFQYRNMFQSVN 388
           CVD+R   +A E + + R+   SV+
Sbjct: 69  CVDMR---MANEAVLRERHPIPSVD 90


>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 25/110 (22%), Positives = 45/110 (40%)
 Frame = +2

Query: 242 RNKKWAYNWSESVLEPIMFKYLELCVDLRKSHVAKEGLFQYRNMFQSVNVGSLEQVIRGY 421
           + K   +N S   +   +FKY    VD+ KS+   + L  + + F + ++   E    G 
Sbjct: 135 KTKIMIFNNSRKTMNNYLFKYRNSKVDIVKSY---KYLGVHFSTFGNFSLAKQEIKKVGL 191

Query: 422 LRMAEERTETARALSTQAVIDTDDLDNLATPESILLSAVSGEDAQDRSDR 571
             + + R E       +  +     D L TP  +  S V G D  D+ ++
Sbjct: 192 KALYKLRKEMGNHFRDKITLTLRLFDTLVTPILLYSSEVWGTDCNDKLEK 241


>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 689 GRPCEQYHDTRFPHEHSYEGAPGIGSRIPKGISPMV*VLFCQIGPG 552
           G  C  +H T+ P+   + G  G    +P  ++ MV   +CQ+  G
Sbjct: 307 GNNCMNHH-TKLPYLWQWRGTGGSWESLPSDMNVMVERSYCQLSEG 351


>SB_29844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 730 LSEFCFSRVL*TKLEGHASNIMIQGFHMSIRTKELQALAVGFPKEF 593
           L EFCF+ +    +EG  SN+ + G    +   +LQA  +G  + F
Sbjct: 7   LGEFCFAMIGRADIEGSKSNVAMNGGSSRV---DLQACKLGTGRRF 49


>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
          Length = 414

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = +2

Query: 107 VNEVESDIKKMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLE 286
           V E  +D    +RY  R  +AL++    +  DK        ++VF+ K          LE
Sbjct: 189 VPENTNDAYTNSRYAVRQYDALQQLTRIIYTDKKKEKTQE-EQVFKEKAMELVVDVDGLE 247

Query: 287 PIMFKYLELCVDLRKSHVAK 346
               K L+LC ++R+  V +
Sbjct: 248 ETFEKQLKLCPEVRELKVLR 267


>SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)
          Length = 632

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 134 KMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPI 292
           K   YG  P++  +     + LD   R  DT Q    NK+  Y   E +LE +
Sbjct: 562 KTKMYGSIPDDLKRFLGTEVTLDGICRVFDTFQYTSLNKRLMYLLCEGMLEQL 614


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,845,088
Number of Sequences: 59808
Number of extensions: 676053
Number of successful extensions: 2256
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2255
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)