Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L21
(870 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D5791C Cluster: PREDICTED: similar to CG4033-PA;... 301 2e-80
UniRef50_P20028 Cluster: DNA-directed RNA polymerase I subunit R... 224 3e-57
UniRef50_Q9H9Y6 Cluster: DNA-directed RNA polymerase I subunit R... 204 2e-51
UniRef50_A6RAC1 Cluster: DNA-directed RNA polymerase; n=6; Ascom... 170 5e-41
UniRef50_O74633 Cluster: DNA-directed RNA polymerase I subunit R... 169 1e-40
UniRef50_Q0UYS6 Cluster: Putative uncharacterized protein; n=1; ... 165 1e-39
UniRef50_Q27493 Cluster: DNA-directed RNA polymerase; n=3; Chrom... 163 5e-39
UniRef50_P22138 Cluster: DNA-directed RNA polymerase I subunit R... 161 3e-38
UniRef50_Q6C6G0 Cluster: DNA-directed RNA polymerase; n=1; Yarro... 153 7e-36
UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 149 1e-34
UniRef50_A7SSE2 Cluster: Predicted protein; n=1; Nematostella ve... 148 2e-34
UniRef50_A0BY74 Cluster: DNA-directed RNA polymerase; n=2; Param... 148 2e-34
UniRef50_P28365 Cluster: DNA-directed RNA polymerase I subunit R... 135 1e-30
UniRef50_UPI00004993B0 Cluster: DNA-directed RNA polymerase subu... 132 1e-29
UniRef50_A4RSZ5 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 127 3e-28
UniRef50_A7AT93 Cluster: DNA-directed RNA polymerase, beta subun... 121 3e-26
UniRef50_Q8SSB7 Cluster: DNA-directed RNA polymerase; n=1; Encep... 119 8e-26
UniRef50_Q4N2L4 Cluster: DNA-directed RNA polymerase, beta subun... 112 1e-23
UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1; Guill... 110 4e-23
UniRef50_A2EN74 Cluster: DNA-directed RNA polymerase; n=1; Trich... 109 1e-22
UniRef50_Q5CNH7 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 102 1e-20
UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79; Magn... 95 2e-18
UniRef50_A3C638 Cluster: DNA-directed RNA polymerase; n=4; Oryza... 91 4e-17
UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3; Arabi... 89 1e-16
UniRef50_Q8TXI6 Cluster: DNA-directed RNA polymerase second-larg... 79 2e-13
UniRef50_Q74NB5 Cluster: NEQ173; n=1; Nanoarchaeum equitans|Rep:... 79 2e-13
UniRef50_Q7RER1 Cluster: DNA-directed RNA polymerase; n=6; Plasm... 69 1e-10
UniRef50_A0RXX0 Cluster: DNA-directed RNA polymerase, beta subun... 69 1e-10
UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8; Plasm... 69 2e-10
UniRef50_A5K506 Cluster: DNA-directed RNA polymerase; n=5; cellu... 66 8e-10
UniRef50_Q58444 Cluster: DNA-directed RNA polymerase subunit B''... 66 8e-10
UniRef50_Q4QA33 Cluster: DNA-directed RNA polymerase; n=6; Trypa... 64 3e-09
UniRef50_Q4QD43 Cluster: DNA-directed RNA polymerase polypeptide... 64 6e-09
UniRef50_Q91F97 Cluster: 428L; n=1; Invertebrate iridescent viru... 62 2e-08
UniRef50_Q7R5G4 Cluster: DNA-directed RNA polymerase; n=1; Giard... 62 2e-08
UniRef50_P15352 Cluster: DNA-directed RNA polymerase subunit B''... 61 3e-08
UniRef50_P11513 Cluster: DNA-directed RNA polymerase subunit B; ... 59 1e-07
UniRef50_UPI0000E487B4 Cluster: PREDICTED: similar to Polymerase... 59 2e-07
UniRef50_Q7QXS5 Cluster: DNA-directed RNA polymerase; n=1; Giard... 59 2e-07
UniRef50_P41558 Cluster: DNA-directed RNA polymerase subunit B''... 58 2e-07
UniRef50_Q5CPZ8 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 58 3e-07
UniRef50_Q197F1 Cluster: Putative uncharacterized protein; n=1; ... 57 7e-07
UniRef50_A2E3T5 Cluster: DNA-directed RNA polymerase; n=1; Trich... 56 2e-06
UniRef50_Q0V2J9 Cluster: DNA-directed RNA polymerase; n=1; Phaeo... 55 3e-06
UniRef50_UPI000065EBB2 Cluster: DNA-directed RNA polymerase III ... 54 4e-06
UniRef50_Q9NW08 Cluster: DNA-directed RNA polymerase III subunit... 54 5e-06
UniRef50_Q6DRH1 Cluster: RNA polymerase II subunit B; n=10; Euka... 54 6e-06
UniRef50_Q236N3 Cluster: DNA-directed RNA polymerase, beta subun... 53 8e-06
UniRef50_Q6E6F3 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 53 8e-06
UniRef50_Q54IZ9 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 53 1e-05
UniRef50_Q7SXI3 Cluster: Zgc:66298 protein; n=1; Danio rerio|Rep... 52 1e-05
UniRef50_Q4Q6P8 Cluster: DNA-directed RNA polymerase II subunit ... 51 3e-05
UniRef50_P08266 Cluster: DNA-directed RNA polymerase II subunit ... 51 3e-05
UniRef50_P30876 Cluster: DNA-directed RNA polymerase II subunit ... 50 6e-05
UniRef50_Q98RY5 Cluster: DNA-directed RNA polymerase; n=1; Guill... 50 8e-05
UniRef50_Q8SQY8 Cluster: DNA-directed RNA polymerase; n=1; Encep... 50 8e-05
UniRef50_UPI00004998DA Cluster: DNA-directed RNA polymerase subu... 49 2e-04
UniRef50_A5DHT2 Cluster: DNA-directed RNA polymerase II subunit ... 48 3e-04
UniRef50_A3AIW8 Cluster: Putative uncharacterized protein; n=2; ... 47 5e-04
UniRef50_Q03587 Cluster: DNA-directed RNA polymerase subunit B; ... 47 7e-04
UniRef50_Q4ZJA8 Cluster: DNA-directed RNA polymerase; n=3; Lymph... 46 0.001
UniRef50_Q4A245 Cluster: Putative DNA-directed RNA polymerase II... 46 0.001
UniRef50_Q06VE3 Cluster: RNA polymerase subunit; n=3; Ascovirus|... 45 0.002
UniRef50_P08518 Cluster: DNA-directed RNA polymerase II subunit ... 45 0.002
UniRef50_Q1L6B6 Cluster: RNA polymerase II second largest subuni... 44 0.004
UniRef50_A7AM79 Cluster: DNA-directed RNA polymerase, beta subun... 42 0.015
UniRef50_Q9LK40 Cluster: DNA-directed RNA polymerase; n=29; Sper... 42 0.027
UniRef50_Q7QSN9 Cluster: DNA-directed RNA polymerase; n=2; Giard... 42 0.027
UniRef50_O96236 Cluster: DNA-directed RNA polymerase; n=10; Euka... 42 0.027
UniRef50_Q3LW27 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 41 0.036
UniRef50_Q4U9X1 Cluster: DNA-directed RNA polymerase; n=26; Euka... 40 0.062
UniRef50_Q5KIB7 Cluster: DNA-directed RNA polymerase; n=72; Euka... 40 0.082
UniRef50_Q98S96 Cluster: DNA-directed RNA polymerase; n=1; Guill... 40 0.11
UniRef50_Q23G41 Cluster: DNA-directed RNA polymerase, beta subun... 40 0.11
UniRef50_A2E7H8 Cluster: DNA-directed RNA polymerase; n=1; Trich... 38 0.44
UniRef50_Q3WFD0 Cluster: Twin-arginine translocation pathway sig... 36 1.8
UniRef50_Q3LW79 Cluster: Second-largest subunit of RNA polymeras... 35 3.1
UniRef50_P42487 Cluster: DNA-directed RNA polymerase subunit 2; ... 34 4.1
UniRef50_A2YRP1 Cluster: DNA-directed RNA polymerase; n=39; Magn... 34 5.4
UniRef50_Q60J73 Cluster: Putative uncharacterized protein CBG246... 33 7.1
UniRef50_Q4Q3P2 Cluster: Putative uncharacterized protein; n=3; ... 33 7.1
UniRef50_A4XAI2 Cluster: Trigger factor; n=2; Salinispora|Rep: T... 33 9.4
UniRef50_O18117 Cluster: Putative uncharacterized protein; n=1; ... 33 9.4
UniRef50_Q0CFH3 Cluster: Predicted protein; n=1; Aspergillus ter... 33 9.4
>UniRef50_UPI0000D5791C Cluster: PREDICTED: similar to CG4033-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG4033-PA - Tribolium castaneum
Length = 272
Score = 301 bits (738), Expect = 2e-80
Identities = 137/241 (56%), Positives = 178/241 (73%), Gaps = 1/241 (0%)
Frame = +3
Query: 123 LAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELP 302
+ PSL+ + P++ +PP+ N LQ LG PH+ SFNYM++ GL AI+DL P EF +
Sbjct: 1 MLDEPSLSNITDPNFGRPPESQNVLLQQLGHPHVSSFNYMINQGLDQAISDLNPVEF-MV 59
Query: 303 SGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-RS 479
+G+K+ + I +A+ + P VPM TVGVKS V P+ECRQRAATYKG RV I+G R
Sbjct: 60 NGDKITLEITDASLSCPLVPMGTVGVKSPKVFPSECRQRAATYKGRFIARVNWAINGERQ 119
Query: 480 VTIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRR 659
++ +G LPIMIKS CHL+ +SP EL++ EH EWGGYFV+KGHERL RMLL+TRR
Sbjct: 120 TAFDKDMGQLPIMIKSNKCHLSAMSPAELVKHGEHEQEWGGYFVVKGHERLVRMLLMTRR 179
Query: 660 NYPVAIKRSGWKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYA 839
NYP+AIKRSGWK RG++FSD G+ +RCV DQT+T NVLHF+T+GT LMFSY+K++YY
Sbjct: 180 NYPIAIKRSGWKARGSIFSDCGISMRCVREDQTATTNVLHFVTDGTAKLMFSYKKVLYYT 239
Query: 840 P 842
P
Sbjct: 240 P 240
>UniRef50_P20028 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=5; Endopterygota|Rep: DNA-directed RNA
polymerase I subunit RPA2 - Drosophila melanogaster
(Fruit fly)
Length = 1129
Score = 224 bits (547), Expect = 3e-57
Identities = 98/231 (42%), Positives = 154/231 (66%), Gaps = 1/231 (0%)
Frame = +3
Query: 153 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTID 332
S P++++ PK + +L +LG PH+DSF+ ML GL + ++P+ + P+GEK+ + ++
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVE 76
Query: 333 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVT-IERSLGYL 509
AKP VP D + V+++ + PT+ RQ +Y G +R+ ++G T I LG +
Sbjct: 77 SIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEV 136
Query: 510 PIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSG 689
PIM++SK C+L +PEE+++ EH EWGG FVI+G+E++ RML++TRRN+P+ +KRS
Sbjct: 137 PIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSS 196
Query: 690 WKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
WK RG FSD G+LV+ V D++S +NV+H+L NGT MFS+ K + Y P
Sbjct: 197 WKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVP 247
>UniRef50_Q9H9Y6 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=53; Coelomata|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Homo sapiens (Human)
Length = 1135
Score = 204 bits (498), Expect = 2e-51
Identities = 100/243 (41%), Positives = 149/243 (61%), Gaps = 1/243 (0%)
Frame = +3
Query: 117 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 296
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 297 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 476
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G
Sbjct: 68 FKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGI 125
Query: 477 SV-TIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVT 653
S I++ LGY+PIM+KSK+C+L +L P+ LIE +E A+E GGYF+I G E++ RML++
Sbjct: 126 SKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMP 185
Query: 654 RRNYPVAIKRSGWKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMY 833
RRN+P+A+ R WK RG ++ YGV + CV + ++ N LH+L NGT L F YRK ++
Sbjct: 186 RRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELF 245
Query: 834 YAP 842
+ P
Sbjct: 246 FLP 248
>UniRef50_A6RAC1 Cluster: DNA-directed RNA polymerase; n=6;
Ascomycota|Rep: DNA-directed RNA polymerase -
Ajellomyces capsulatus NAm1
Length = 1214
Score = 170 bits (413), Expect = 5e-41
Identities = 95/251 (37%), Positives = 141/251 (56%), Gaps = 25/251 (9%)
Frame = +3
Query: 165 YRKPPK--IANPYLQSLGAPHIDSFNYMLDDG--LKFAIADLLPSEF------------- 293
+R PPK A P L + PHIDSFN + D+ L+ A+ D+ F
Sbjct: 22 FRHPPKDHTAYPSLAASIRPHIDSFNALFDNNKILEAALKDIGTKSFLDGDAETQEQKRV 81
Query: 294 ------ELPSGEKVKVTIDEAAFAKPNVPMDT-VGVKSQVVLPTECRQRAATYKGELKIR 452
P K+ V I E K +P +++ + P+ECR+R ATY+G L+ R
Sbjct: 82 RLDDGRRSPRRNKLSVRITELFLEKAMLPASNKFSTRNREIYPSECRERHATYRGRLRAR 141
Query: 453 VTLCID-GRSVTIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHER 629
+ ++ G R LG +PIM++S CHL SPE+L+++ E ++E GGYF++ G+E+
Sbjct: 142 LEYRVNNGEWKESVRELGQVPIMLRSNRCHLEKCSPEQLVQRKEESEELGGYFIVNGNEK 201
Query: 630 LARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLM 809
L RML+V RRN+P+AI RS + RG ++ YG+ +R V +DQTS NVLH+L++G
Sbjct: 202 LIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRADQTSQTNVLHYLSDGNVTFR 261
Query: 810 FSYRKMMYYAP 842
FS+RK Y P
Sbjct: 262 FSWRKNEYLVP 272
>UniRef50_O74633 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=14; Ascomycota|Rep: DNA-directed RNA polymerase
I subunit RPA2 - Neurospora crassa
Length = 1234
Score = 169 bits (410), Expect = 1e-40
Identities = 94/241 (39%), Positives = 137/241 (56%), Gaps = 15/241 (6%)
Frame = +3
Query: 165 YRKPP--KIANPYLQSLGAPHIDSFNYML-DDG----LKFAIADLLPSEF------ELPS 305
+R PP + A P LQ+ PHI+SFN + DDG L A+A++ F P
Sbjct: 26 FRDPPTDRTAYPALQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERADPQ 85
Query: 306 GE-KVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCI-DGRS 479
G+ K+ + K VP K++ + P ECR+R +Y+G+L I DG
Sbjct: 86 GKNKLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRINDGEP 145
Query: 480 VTIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRR 659
R LG +PIM+KS CHL + SP +L+ + E ++E GGYF++ G E+L RMLLV RR
Sbjct: 146 HEFVRELGQMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEKLIRMLLVNRR 205
Query: 660 NYPVAIKRSGWKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYA 839
N+P+AI R ++ RG ++ YG+++R V D+TS NVLH+L++G FS+RK Y
Sbjct: 206 NFPLAIVRPSFQNRGASYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKNEYLI 265
Query: 840 P 842
P
Sbjct: 266 P 266
>UniRef50_Q0UYS6 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1101
Score = 165 bits (402), Expect = 1e-39
Identities = 97/262 (37%), Positives = 151/262 (57%), Gaps = 20/262 (7%)
Frame = +3
Query: 117 KKLAQNP-SLAYTS---HPDYRKPPK--IANPYLQSLGAPHIDSFNYMLDDG--LKFAIA 272
KK Q P + A+ + H + PPK A P L + PHI+SFN + G L+ A+
Sbjct: 7 KKAQQKPWTTAFDTKRRHDLFSNPPKDSTAYPTLAAAVDPHINSFNSIFAAGGQLEEALK 66
Query: 273 DLLPSEF----------ELPSGEKVKVTIDEAAFAKPNVP-MDTVGVKSQVVLPTECRQR 419
D+ F E+ ++ V I + K +P + V +K++ +LP ECR+R
Sbjct: 67 DIGTKVFLDGNPYARPEEVGQRNRLSVRIQDVFLDKSVLPPSNKVALKNRNILPAECRER 126
Query: 420 AATYKGELKIRVTLCIDGRSVTIER-SLGYLPIMIKSKMCHLADLSPEELIEKNEHADEW 596
ATY+G+L+ R+ ++ E LG +PIM++S CHL ++SP++L++ E ++E
Sbjct: 127 HATYRGKLRARLEWKVNNGDWREEVCDLGAVPIMLRSNRCHLENMSPDQLVKAKEESEEL 186
Query: 597 GGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLVRCVTSDQTSTNNVL 776
GGYF++ G E++ RML V RRN+P+AIKR + RG ++ YG+L+R + DQTS N L
Sbjct: 187 GGYFIVNGIEKIIRMLQVNRRNFPMAIKRGAFTNRGPGYTQYGILLRSMRPDQTSQTNAL 246
Query: 777 HFLTNGTCXLMFSYRKMMYYAP 842
H+L++G L FS+RK Y P
Sbjct: 247 HYLSDGNVNLRFSWRKAEYLVP 268
>UniRef50_Q27493 Cluster: DNA-directed RNA polymerase; n=3;
Chromadorea|Rep: DNA-directed RNA polymerase -
Caenorhabditis elegans
Length = 1127
Score = 163 bits (396), Expect = 5e-39
Identities = 81/211 (38%), Positives = 128/211 (60%), Gaps = 3/211 (1%)
Frame = +3
Query: 219 HIDSFNYMLDDGLKFAIADLLPSE-FELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQV- 392
H+DSF++++ G +FA A +P+E F L +G+ V + A KP + +
Sbjct: 9 HVDSFDFLVSKGCQFA-AQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLP 67
Query: 393 VLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIKSKMCHLADLSPEELI 569
+LP ECRQR TY G LK+ + + ++G R IE LG +PIM++S+ CHL +S +EL+
Sbjct: 68 LLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELV 127
Query: 570 EKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLVRCVTS 749
E E GGYF++ G E++ R+L+ RRN+P+AI R +K +G LFS++GV++R V
Sbjct: 128 VAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKE 187
Query: 750 DQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
+ T+ LH+L GT L +R+ ++Y P
Sbjct: 188 NHTAVMMTLHYLDTGTMQLALQFRREIFYVP 218
>UniRef50_P22138 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=22; Eukaryota|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1203
Score = 161 bits (390), Expect = 3e-38
Identities = 100/248 (40%), Positives = 141/248 (56%), Gaps = 25/248 (10%)
Frame = +3
Query: 174 PPK--IANPYLQSLGAPHIDSFNYMLD--DG--LKFAIADL----------LPSEFELPS 305
PPK A P LQ PHI SFN + + DG L + D+ L SE E+ +
Sbjct: 28 PPKDKSAFPLLQEAVQPHIGSFNALTEGPDGGLLNLGVKDIGEKVIFDGKPLNSEDEISN 87
Query: 306 ----GEKVKVTIDEAAFAKPNVPMDTVGVKSQV---VLPTECRQRAATYKGELKIRVTLC 464
G K+ V++++ + AKP M GV S V V P+E RQR +Y+G+L +++
Sbjct: 88 SGYLGNKLSVSVEQVSIAKP---MSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWS 144
Query: 465 ID-GRSVTIE-RSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLAR 638
++ G E R G LP+M++S CHL +SP EL++ E +DE GGYF++ G E+L R
Sbjct: 145 VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIR 204
Query: 639 MLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSY 818
ML+V RRN+P+AI R + RG +S YG+ +R V DQTS NVLH+L +G FS+
Sbjct: 205 MLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSW 264
Query: 819 RKMMYYAP 842
RK Y P
Sbjct: 265 RKNEYLVP 272
>UniRef50_Q6C6G0 Cluster: DNA-directed RNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA-directed RNA polymerase - Yarrowia
lipolytica (Candida lipolytica)
Length = 1165
Score = 153 bits (370), Expect = 7e-36
Identities = 79/233 (33%), Positives = 131/233 (56%), Gaps = 10/233 (4%)
Frame = +3
Query: 174 PPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEF---------ELPSGEKVKVT 326
P + P L+ APHI SFN + + G+ ++ +L E + G ++ +
Sbjct: 22 PDEQKYPLLRDAVAPHIGSFNALTEGGMD-SLLNLAAKEVGERVVFDGDDENLGNRLAIR 80
Query: 327 IDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIE-RSLG 503
+ +P V + ++ V P+ECR+R ATY+ + + + ++G E R +G
Sbjct: 81 VANVQLGRPTVSANDKTTINRKVFPSECRERMATYRARMVLTLGYSVNGGPEKFESRDVG 140
Query: 504 YLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKR 683
+PIM+ S CHL + P++++ E ++E GGYFVI G E+L R+L+V RRN+P+AI R
Sbjct: 141 MIPIMMGSNRCHLEGMGPKDMVAHKEESEEQGGYFVINGLEKLIRLLIVQRRNHPLAIIR 200
Query: 684 SGWKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
+ RG+ ++ +GV +R V DQ+S NVLH+L++G + FS+RK Y P
Sbjct: 201 KSFTKRGSNYTTFGVQIRSVRPDQSSQTNVLHYLSDGGITMRFSWRKNEYLVP 253
>UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Dictyostelium discoideum AX4
Length = 1130
Score = 149 bits (360), Expect = 1e-34
Identities = 84/234 (35%), Positives = 125/234 (53%), Gaps = 17/234 (7%)
Frame = +3
Query: 198 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG 377
L+SL PHIDSF++ D G+ + D P FE S + K+ + ++P +
Sbjct: 5 LKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQ-YKIRFTDLKLSRPTRNIVEKE 63
Query: 378 VKSQVVLPTECRQRAATYKGELKIRVTL--------CIDGRSV---------TIERSLGY 506
+K + P E R+ TY K + L DG V T E LG
Sbjct: 64 IK---LYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGR 120
Query: 507 LPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRS 686
LPIM+KS+ CHL +SPE+LIE E E GGYF++ G+E++ RML++T+ N+PVA+ R
Sbjct: 121 LPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRK 180
Query: 687 GWKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAPPT 848
W RG ++ G+ +RCV D++S N LH++ +G L F YR+ ++ P T
Sbjct: 181 AWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPAT 234
>UniRef50_A7SSE2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 913
Score = 148 bits (359), Expect = 2e-34
Identities = 64/166 (38%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +3
Query: 348 KPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIK 524
+P++ ++ + L +CR++ +TY +L++ + ID ++ + + +P+M+K
Sbjct: 39 RPHIESFNFMLEEGLPLAAQCREKGSTYCSKLQVTLQWKIDNVPQGSVTKVIAAIPLMVK 98
Query: 525 SKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 704
S C LA+LSP+EL+ KNE + E GGYF++ G E++ RML++ RRNYP+AI R WK RG
Sbjct: 99 SNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLAIIRPSWKGRG 158
Query: 705 NLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
+ +++YGV +R V DQ++ N LH+L +G + +YRK +YY P
Sbjct: 159 SFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVP 204
Score = 35.9 bits (79), Expect = 1.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 135 PSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFA 266
PSL + +Y + +Q L PHI+SFN+ML++GL A
Sbjct: 13 PSLKNLTLKNYGRLSDTQKQSIQDLVRPHIESFNFMLEEGLPLA 56
>UniRef50_A0BY74 Cluster: DNA-directed RNA polymerase; n=2;
Paramecium tetraurelia|Rep: DNA-directed RNA polymerase
- Paramecium tetraurelia
Length = 1115
Score = 148 bits (359), Expect = 2e-34
Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 5/213 (2%)
Frame = +3
Query: 219 HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAF----AKPNVPMDTVGVKS 386
HI+SFNY+ GL L P E +P +++ + +P +
Sbjct: 16 HIESFNYLYTHGLVEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMPTQQGMLGD 75
Query: 387 QVVLPTECRQRAATYKGELKIRVTLCIDGR-SVTIERSLGYLPIMIKSKMCHLADLSPEE 563
VLPT+CRQ +Y + + ID T+ SLG +PI++KS+ CHL LS EE
Sbjct: 76 NRVLPTQCRQMKKSYTAPMLATICREIDDNPKETVRLSLGEIPILVKSQKCHLNGLSAEE 135
Query: 564 LIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLVRCV 743
L+++ E +E+GGYF+I G+E++ RML++ +RNYP+A KR G+K +G FS Y V ++CV
Sbjct: 136 LVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYKNKGFNFSPYAVQMKCV 195
Query: 744 TSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
SDQ + LH+L +G L +K P
Sbjct: 196 RSDQYARTITLHYLMDGNVYLRIILKKKELQMP 228
>UniRef50_P28365 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=2; Intramacronucleata|Rep: DNA-directed RNA
polymerase I subunit RPA2 - Euplotes octocarinatus
Length = 1166
Score = 135 bits (327), Expect = 1e-30
Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 5/219 (2%)
Frame = +3
Query: 201 QSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKV----KVTIDEAAFAKPNVPMD 368
+++ HIDSF++ + L A +LP ++ +P K+T+ +F +
Sbjct: 17 KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76
Query: 369 TVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV-TIERSLGYLPIMIKSKMCHLA 545
+ S ++ P+ECRQR TY L + D V + LG +P M + K C+L
Sbjct: 77 EIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNLK 136
Query: 546 DLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYG 725
L+ +EL ++ E E+GGYF++ G+E++ RML+V +RN+P+A KRS + RG F+DYG
Sbjct: 137 GLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTDYG 196
Query: 726 VLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
V +RCV D T+ L +L++G+ L Y+K + P
Sbjct: 197 VQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIP 235
>UniRef50_UPI00004993B0 Cluster: DNA-directed RNA polymerase
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1106
Score = 132 bits (318), Expect = 1e-29
Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 3/226 (1%)
Frame = +3
Query: 174 PPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEF-ELPSGEKVKVTIDEAAFAK 350
P K +N L+ L H +SFNY L+ G + + + + + S E ++++ + K
Sbjct: 4 PNKPSNE-LKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEK 62
Query: 351 PNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIKSK 530
P + P CR A TY G +K+ +T+ + + TIE G +PIM+ S
Sbjct: 63 PTY-------NGLPLFPYMCRSAALTYSGRIKLTITIKENDSNKTIEVDGGEIPIMVGSS 115
Query: 531 MCHLAD--LSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 704
C + +PEE I E E GGYF+I G ER RM++ + N+P+A+ R W +G
Sbjct: 116 KCWIGSEYTTPEERINIREDPHEIGGYFIINGIERYLRMIVYAKPNHPLAVTRPSWTNKG 175
Query: 705 NLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
F+ YG+++RC+ D T+ N LHFL NG L F ++K ++ P
Sbjct: 176 AHFTKYGIIIRCMRDDITTLTNTLHFLDNGKVSLRFIFKKQEFFIP 221
>UniRef50_A4RSZ5 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus lucimarinus CCE9901
Length = 1145
Score = 127 bits (307), Expect = 3e-28
Identities = 67/217 (30%), Positives = 117/217 (53%), Gaps = 2/217 (0%)
Frame = +3
Query: 198 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSG-EKVKVTIDEAAFAKPNVPMDTV 374
++ L A H+DSFN++ + G + + P +F+ +G ++ + +++
Sbjct: 36 IKKLFACHVDSFNHLTNLGFDQILRCVKPEKFQQSAGCPELMLWLEDLKLESLKFRHRIS 95
Query: 375 GVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER-SLGYLPIMIKSKMCHLADL 551
G P CR+ +YK L ++ IDG +V +LG P+M+KS +C LA L
Sbjct: 96 GRTESQKTPRGCREGGESYKAPLSVQFCWQIDGENVQRRVVNLGDCPVMVKSDVCSLALL 155
Query: 552 SPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVL 731
SP +L+ + E A E GGYF+I G ER+ RM++ RR++ + + R + R LFS++ +
Sbjct: 156 SPAQLVARGEEAHEAGGYFIINGIERMIRMIIQQRRHHILGLCRRAFTKRSPLFSEFATV 215
Query: 732 VRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
+RCVT D+ S+ LH++ G L +R+ ++ P
Sbjct: 216 IRCVTEDEHSSIVRLHYMRTGALRLALQHRRQEFFIP 252
>UniRef50_A7AT93 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Babesia bovis
Length = 1283
Score = 121 bits (291), Expect = 3e-26
Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Frame = +3
Query: 315 VKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS--VTI 488
V+V++ P P + P + TY+ L ++ L I G S +T
Sbjct: 71 VQVSVLSLRIGNPTRPGSECLGSDNRMFPRHAKIAHTTYESSLIVKFGLKIPGTSKVLTK 130
Query: 489 ERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYP 668
E ++GY+PIM+KSK C+L +SPEE++E+ E DE GGYFV++G+ER+ R L+V R NYP
Sbjct: 131 ELTVGYIPIMVKSKRCNLDGISPEEMVEQGEDIDEPGGYFVVRGNERIVRQLIVLRSNYP 190
Query: 669 VAIKRSGWKMRGNLFSDYGVLVRCVTSDQ-TSTNNVLHFLTNGTC 800
+AIK + + LF+DY +++R D S NNVL+ N C
Sbjct: 191 LAIKSGNNRTKHVLFTDYSIMMRSQCHDDGCSVNNVLYLTVNKRC 235
>UniRef50_Q8SSB7 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA
polymerase - Encephalitozoon cuniculi
Length = 1062
Score = 119 bits (287), Expect = 8e-26
Identities = 71/217 (32%), Positives = 119/217 (54%), Gaps = 2/217 (0%)
Frame = +3
Query: 198 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVP-MDTV 374
L+ HI+++N + + + + +L+ L G K K+ ++E A P + D +
Sbjct: 15 LKDAAKAHIEAYNAIFNGNI---LDNLVAGVPPLVKG-KTKIIVEEIHVAPPFLSDKDHI 70
Query: 375 GVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS-VTIERSLGYLPIMIKSKMCHLADL 551
V ++ LP ECR+R TYKG++ +RV+L D + VT ++S G+ PIM++S +CHL +
Sbjct: 71 SVDRRL-LPRECRERGLTYKGKMVVRVSLFHDNKHVVTEDKSAGHFPIMVRSTLCHLNGI 129
Query: 552 SPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVL 731
+ E E DE GGYF+I G +R R ++ +RN+ A K + + + FSDY V
Sbjct: 130 KNKN--EVGEDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAFK---MRKKTSFFSDYMVS 184
Query: 732 VRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
+RCV D+ N LH+ T+G + ++K + P
Sbjct: 185 MRCVGRDEIGHMNFLHYCTDGNVVIKIFHKKYEFLFP 221
>UniRef50_Q4N2L4 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=2; Theileria|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Theileria parva
Length = 1235
Score = 112 bits (269), Expect = 1e-23
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 3/179 (1%)
Frame = +3
Query: 315 VKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTL-CIDGRSV-TI 488
VKV+I P P SQ + P + TY+ L + + + S+ T
Sbjct: 59 VKVSIISLKIGYPTRPGSECIGTSQKMYPRHAKISHTTYEAPLVVTFGIKFFESESIITK 118
Query: 489 ERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYP 668
E +G++PIM++S C+L LS EE+I++ E ADE GGYF+IKG+E++ R L+V R NYP
Sbjct: 119 EVPVGHIPIMVRSNRCNLKGLSGEEMIKQGEDADEPGGYFIIKGNEKMLRQLIVPRSNYP 178
Query: 669 VAIKRSGWKMRGNLFSDYGVLVRCVTS-DQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
+A K + LF++Y + +RC + D T +N LH N C R + P
Sbjct: 179 IAFKSDSNSQKNVLFTEYSIFMRCQSDLDGTCVSNYLHLTINKRCMFRVIVRNSIVLVP 237
>UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase -
Guillardia theta (Cryptomonas phi)
Length = 1109
Score = 110 bits (265), Expect = 4e-23
Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 1/216 (0%)
Frame = +3
Query: 198 LQSLGAPHIDSFNYMLDDGLKFAIAD-LLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTV 374
LQSL H++S+N ++ G F + F+ + K +ID F N P+
Sbjct: 9 LQSLLKIHLNSYNQIISQGFYFLRQKYFITKNFKEYNSFKGLTSID---FYLSN-PIYQF 64
Query: 375 GVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIKSKMCHLADLS 554
G +LP + ++ TY+GE I + + + ++ + G PIMIKS C+L L
Sbjct: 65 GTLIHKILPRQSKELKITYQGEFIISINIQNNEKNFNLVYKEGDFPIMIKSLKCNLFGLK 124
Query: 555 PEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLV 734
P +L E +E E GGYF+ G E+L R+++V RRNY + +RG FS + +
Sbjct: 125 PHQLTEIDEEEFENGGYFITNGTEKLIRLIIVPRRNYIFTSSKISNTLRGKNFSSFACSI 184
Query: 735 RCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
RCV S LH+LTNG+ F R ++ P
Sbjct: 185 RCVNRYGLSRTFHLHYLTNGSILCRFIIRNQEFFFP 220
>UniRef50_A2EN74 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1104
Score = 109 bits (261), Expect = 1e-22
Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 3/237 (1%)
Frame = +3
Query: 168 RKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEK--VKVTIDEAA 341
++PP+ L +PH++SFN+ ++ GL+ I + +P +F G+ + + E
Sbjct: 4 QRPPEEQYKDLCHFLSPHLESFNWAVNTGLQ-KIPEWIPEQFVKRDGDDRILHFHVKELT 62
Query: 342 FAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCI-DGRSVTIERSLGYLPIM 518
KP D G K + P CR TY G L I + I D +P+M
Sbjct: 63 LTKP---YDARGNK---IYPYMCRLGGQTYGGSLNIILEAAINDLPPKKFSVVANNIPVM 116
Query: 519 IKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKM 698
+ S +CHL L+P+E E E GGYF+ G+E+L R+L++ R+NY A+ R +
Sbjct: 117 VNSDLCHLKGLTPQEKGALMEEPTEAGGYFIYSGYEKLLRLLILNRQNYVFALNRPSFHS 176
Query: 699 RGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAPPTPSLMXCL 869
RG F+++ R + D +S +H+ G ++ ++ M++ P P L+ L
Sbjct: 177 RGPTFTNFATSFRSMAPDCSSITTNVHYQNTGNMVVLIPIQRRMFFV-PLPILLRAL 232
>UniRef50_Q5CNH7 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium hominis
Length = 1281
Score = 102 bits (244), Expect = 1e-20
Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 16/231 (6%)
Frame = +3
Query: 216 PHIDSFNYMLDDGLKFAIADL---------LPSEFELPSG----EKVKVTIDEAAFAKPN 356
PHI+SFN L GLK + +L + + EL + E +++ + A KP
Sbjct: 15 PHIESFNTFLSVGLKNIVKNLPKIYVDSGFIQDDCELNAAYSPAEYLRIGVTSAKIGKPI 74
Query: 357 VPM-DTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSL--GYLPIMIKS 527
++ G K + P R +Y L + + S+ G +PIM+KS
Sbjct: 75 FGYSESSGTK---LTPQHARNGHISYSAPLWLEFEGYNSSLDTVSKHSIYAGTIPIMVKS 131
Query: 528 KMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGN 707
CHL L +EL+EK E +E GGYF+I G+ER+ R ++ R NYP+ +KR + +
Sbjct: 132 SNCHLFGLGTKELVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKRPRFATFDS 191
Query: 708 LFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAPPTPSLM 860
S+Y VL+R + D TST N L+ ++ C + + P P LM
Sbjct: 192 FGSEYAVLMRSLRDDGTSTANYLYGTSDHQCIYRVLLNRQEWLIPFWPLLM 242
>UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79;
Magnoliophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1233
Score = 95.1 bits (226), Expect = 2e-18
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Frame = +3
Query: 381 KSQVVLPTECRQRAATYKGELKIRVTLCI-DGRSVTIERSLGYLPIMIKSKMCHLADLSP 557
+ + +LP ECRQ +Y G V DG V + G PIM+ SK+C L
Sbjct: 113 RKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADC 172
Query: 558 EELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLVR 737
+L++ E E GGYF++ G ER+ R ++ +RN+P ++ R+ ++ R +S V+ R
Sbjct: 173 RKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTR 232
Query: 738 CVTSDQTSTNNVLHFLTNGTCXLMF 812
CV DQ+S L++L NG+ + F
Sbjct: 233 CVRDDQSSVTVKLYYLRNGSARVGF 257
>UniRef50_A3C638 Cluster: DNA-directed RNA polymerase; n=4; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1134
Score = 90.6 bits (215), Expect = 4e-17
Identities = 42/96 (43%), Positives = 60/96 (62%)
Frame = +3
Query: 525 SKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRG 704
SK+CHL E+LI E A E GGYF+ G ERL R+L++ +RNYP+ + R + RG
Sbjct: 90 SKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKRNYPMGLIRGSFVNRG 149
Query: 705 NLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMF 812
++D V++RCV DQ+S L++L NG+ L F
Sbjct: 150 AGYTDKAVIIRCVQDDQSSVTIKLYYLLNGSARLGF 185
Score = 36.7 bits (81), Expect = 0.77
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 198 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELP 302
L+ L PHIDSF+Y +D+GL + + P E +P
Sbjct: 18 LRELYRPHIDSFDYFIDEGLDKMLQSIRPVEITVP 52
>UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1114
Score = 89.0 bits (211), Expect = 1e-16
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Frame = +3
Query: 405 ECRQRAATYKGELKIRVTLCI-DGRSVTIERSLGYLPIMIKSKMCHLADLSPEELIEKNE 581
+CRQ +Y G V DG V + G PIM+ SK+C L +L++ E
Sbjct: 39 DCRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCKE 98
Query: 582 HADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLVRCVTSDQTS 761
E GGYF++ G ER+ R ++ +RN+P ++ R+ ++ R +S V+ RCV DQ+S
Sbjct: 99 STSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQSS 158
Query: 762 TNNVLHFLTNGTCXLMF 812
L++L NG+ + F
Sbjct: 159 VTVKLYYLRNGSARVGF 175
>UniRef50_Q8TXI6 Cluster: DNA-directed RNA polymerase second-largest
subunit, the N-terminal part; n=1; Methanopyrus
kandleri|Rep: DNA-directed RNA polymerase second-largest
subunit, the N-terminal part - Methanopyrus kandleri
Length = 525
Score = 78.6 bits (185), Expect = 2e-13
Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 1/145 (0%)
Frame = +3
Query: 213 APHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQV 392
A H S+++++D+GL+ I + P E E+ G ++ + +P+ ++ G + ++
Sbjct: 31 AHHFLSYHWLIDEGLQQLIEQMEPIEPEV-EGASYRIEFERIEVGEPS-SIEPDGARRKI 88
Query: 393 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS-LGYLPIMIKSKMCHLADLSPEELI 569
P E R R Y L + + DG V + +G LP+M++SK+C+ LS EELI
Sbjct: 89 Y-PMEARLRNMLYSAPLYAEIVMYEDGEEVERDNVYVGELPVMVRSKVCNTYGLSEEELI 147
Query: 570 EKNEHADEWGGYFVIKGHERLARML 644
E E + GGYF+I G ER+ L
Sbjct: 148 EVGEDPKDPGGYFIINGSERVLMSL 172
>UniRef50_Q74NB5 Cluster: NEQ173; n=1; Nanoarchaeum equitans|Rep:
NEQ173 - Nanoarchaeum equitans
Length = 493
Score = 78.6 bits (185), Expect = 2e-13
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Frame = +3
Query: 216 PHIDSFNYMLDDGLKFAIADLLPSEFEL-PSGEKVKVTID-EAAFAKPNVPMDTVGVKSQ 389
P +DSFN+++D GLK I ++ EFE+ P G K + + K + +D G +
Sbjct: 23 PQLDSFNWLIDHGLKRIIQEVGKVEFEVTPEGVKEAYLVAVDIEVGKAQI-IDIQGPR-- 79
Query: 390 VVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER--SLGYLPIMIKSKMCHLADLSPEE 563
++ P E R R TY +++R DG + +R +G LP+M++SK+C+ LS EE
Sbjct: 80 IIYPYEARLRQLTYSAPVRVRFQYYEDGE-LKEDRWVKIGELPVMVRSKICNTYGLSEEE 138
Query: 564 LIEKNEHADEWGGYFVIKGHERLARM 641
L++ E + GGYF+I G +R+ M
Sbjct: 139 LLKVYEDPLDPGGYFIINGVDRVIVM 164
>UniRef50_Q7RER1 Cluster: DNA-directed RNA polymerase; n=6;
Plasmodium (Vinckeia)|Rep: DNA-directed RNA polymerase -
Plasmodium yoelii yoelii
Length = 1470
Score = 69.3 bits (162), Expect = 1e-10
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 12/170 (7%)
Frame = +3
Query: 189 NPYLQSLGAPHIDSFNYMLDDGLK-----FAIADLLPS-------EFELPSGEKVKVTID 332
N + + L HID FN ++ +K + + P+ +E E++K I
Sbjct: 83 NIFTKFLVQSHIDDFNSFINVYIKNMPETLPVIEFSPNLNKYSCLNYEKKPKERIKFYIS 142
Query: 333 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLP 512
+ P + D + P C+ +TY+GE+ + + V S G++P
Sbjct: 143 DIIIKTPVIKNDNGNTRPNY--PYLCKLACSTYEGEVLVVINKQYKNEIVRTTVSTGFIP 200
Query: 513 IMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRN 662
IM+ S +C+L +L+ +EL++K E GG+F++ GH ++ R ++ + N
Sbjct: 201 IMVLSDLCNLKNLNKKELVQKGEDESILGGFFIVSGHLKIIRYVICPKYN 250
>UniRef50_A0RXX0 Cluster: DNA-directed RNA polymerase, beta
subunit/140 kD subunit; n=2; Thermoprotei|Rep:
DNA-directed RNA polymerase, beta subunit/140 kD subunit
- Cenarchaeum symbiosum
Length = 1115
Score = 69.3 bits (162), Expect = 1e-10
Identities = 46/163 (28%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Frame = +3
Query: 153 SHPDYRKPPKIANPYL-QSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGE-KVKVT 326
+HP ++ P I + + + H++SF+ L+ GL+ I + + E+ + E K+
Sbjct: 2 AHPANKRWPVIQDILRREGIARQHLNSFDEFLERGLQSIIDE--QGQIEIENAEYPYKIQ 59
Query: 327 IDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER-SLG 503
+ + KP + M+ G + + P E R R +Y + + ++ DG+++ + +G
Sbjct: 60 LGKVKLQKPRM-MELDGSITYIT-PAEGRLRNVSYSAPVMMEASVVEDGKTLESKFVHIG 117
Query: 504 YLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
+P MIKS C L +L ++LIE+ E ++ GGYF+I G ER+
Sbjct: 118 DIPTMIKSSACVLHNLPDQKLIEQGEDPNDPGGYFIINGSERV 160
>UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8;
Plasmodium|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum (isolate 3D7)
Length = 1450
Score = 68.9 bits (161), Expect = 2e-10
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 2/177 (1%)
Frame = +3
Query: 117 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 296
KK+ +N T + ++ P ++ L HI+S+NY + +K + +
Sbjct: 227 KKIYENSKCVNTLNEKWKLLPAYLK--VKGLVKQHIESYNYFIKREIKTIMNATTNKIIK 284
Query: 297 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 476
E V + P+V + + K + P CRQR TY + + V + G
Sbjct: 285 SDIDEHFYVEFLDITVGTPSVEENMIETK---LTPQICRQRDLTYSAPIYVDVEY-VKGN 340
Query: 477 SVTIERS--LGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARM 641
S+ + + +G LP+M++S +C L + S EEL++ E + GGYF++KG ER+ M
Sbjct: 341 SIITKNNVEIGRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLM 397
>UniRef50_A5K506 Cluster: DNA-directed RNA polymerase; n=5; cellular
organisms|Rep: DNA-directed RNA polymerase - Plasmodium
vivax
Length = 1562
Score = 66.5 bits (155), Expect = 8e-10
Identities = 32/124 (25%), Positives = 64/124 (51%)
Frame = +3
Query: 291 FELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCID 470
F S + +K + + P + D ++ P C+ A TY+GE+ +++ +
Sbjct: 137 FNRKSTDSIKFYVSDIKIKNPVLKNDKGETRNDY--PYLCKLSARTYEGEITLKINKKTN 194
Query: 471 GRSVTIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLV 650
++ S GY+P+M+ S +C+L+ L+ + L +K E GG+FV+ GH ++ R ++
Sbjct: 195 DEIISTTVSAGYIPVMVLSNLCNLSSLNKKMLPQKGEDESLLGGFFVVSGHLKVIRYVIH 254
Query: 651 TRRN 662
+ N
Sbjct: 255 PKYN 258
>UniRef50_Q58444 Cluster: DNA-directed RNA polymerase subunit B'';
n=1; Methanocaldococcus jannaschii|Rep: DNA-directed RNA
polymerase subunit B'' - Methanococcus jannaschii
Length = 498
Score = 66.5 bits (155), Expect = 8e-10
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Frame = +3
Query: 222 IDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLP 401
I+S+N +++ L+ I ++ E E+ G KVK + + KP + ++ + P
Sbjct: 22 IESYNDFVENRLQKIIDEVGYIETEITGGYKVK--LGKIKVGKPVIKEADGSIRP--ITP 77
Query: 402 TECRQRAATYKGELKIRVTLCI----DGRS-VTIERSLGYLPIMIKSKMCHLADLSPEEL 566
E R R TY L + +T I D R T+E +G LP+M+ SK+CHL S EEL
Sbjct: 78 MEARIRDLTYSVPLYLEMTPIIGEGEDAREGETVEVYIGELPVMLGSKICHLYGKSREEL 137
Query: 567 IEKNEHADEWGGYFVIKGHERL 632
I+ E ++ GYF+I G E++
Sbjct: 138 IDLGEDPEDPFGYFIINGTEKV 159
>UniRef50_Q4QA33 Cluster: DNA-directed RNA polymerase; n=6;
Trypanosomatidae|Rep: DNA-directed RNA polymerase -
Leishmania major
Length = 1616
Score = 64.5 bits (150), Expect = 3e-09
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Frame = +3
Query: 510 PIMIKSKMCHLADLSPE-ELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRS 686
P M+K C L ++ + E E GGYF++ G ER+ R LL+ R N P+ I R
Sbjct: 474 PEMVKGARCALRNVDARLDHFRALEEQKEVGGYFIMNGGERILRALLMQRCNVPINIYRE 533
Query: 687 GWKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAPPTPSLMXC 866
+ +G FS V++RC + N ++ T G ++FS+ + + + P P L+
Sbjct: 534 KFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQG--EVIFSFARKVVWHLPAPLLLNA 591
Query: 867 L 869
+
Sbjct: 592 M 592
>UniRef50_Q4QD43 Cluster: DNA-directed RNA polymerase polypeptide,
putative; n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase polypeptide, putative - Leishmania major
Length = 1132
Score = 63.7 bits (148), Expect = 6e-09
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Frame = +3
Query: 219 HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVL 398
HI SF+++++ L+ + + E + + +P + G ++V
Sbjct: 36 HIASFDHLIEVELQRILLNESNVEIKSTVDPDFVIRYQNIRICRPQEIVGK-GHIPKLVT 94
Query: 399 PTECRQRAATYKGELKIRVTLCIDGRS--VTIERS--LGYLPIMIKSKMCHLADLSPEEL 566
P ECR R TY+G++ + V RS + +E+ +G +PIM+KSK C+L + EEL
Sbjct: 95 PQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEKDVKIGTIPIMLKSKCCNLYRKTREEL 154
Query: 567 IEKNEHADEWGGYFVIKGHERL 632
+ E + GGYF+IKG E++
Sbjct: 155 VNMRECPLDPGGYFIIKGVEKV 176
>UniRef50_Q91F97 Cluster: 428L; n=1; Invertebrate iridescent virus
6|Rep: 428L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 1193
Score = 61.7 bits (143), Expect = 2e-08
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Frame = +3
Query: 309 EKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCI--DGRSV 482
EK+ + + AKP + D V+ + P E RQ+ TY + + V + D +
Sbjct: 91 EKIMLKFENVFVAKPTITNDDTTVRP--LYPAEARQKMITYDSFVFVDVLEYVLRDEEEI 148
Query: 483 TIERSL----GYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
+ + L +PIM++S C+L + +P+E IE E ++ GGYF+I G+ER+
Sbjct: 149 LVNKHLRVQIAKIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYFIINGNERV 202
>UniRef50_Q7R5G4 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 1238
Score = 61.7 bits (143), Expect = 2e-08
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 8/158 (5%)
Frame = +3
Query: 180 KIANPYL--QSLGAPHIDSFNYMLDDGLKFAIAD---LLPSEFELPSGEKVKVTIDEAAF 344
++ + YL +S+ H+DSFN++LD + I + L+ ++ KV + + +
Sbjct: 23 RLIHSYLMTESITKHHLDSFNHLLDVTIPAIIKENSLLVVAKHPQFHLRIEKVDVKQVSQ 82
Query: 345 AKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTI---ERSLGYLPI 515
+ + G + P ECRQR TY + I V +S E +GY+PI
Sbjct: 83 GSSKLSSSSAG-SGVGLTPHECRQRNMTYAAPITIDVRCKASNKSSVQYYKEICIGYIPI 141
Query: 516 MIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHER 629
M++S C L + S ++ E D+ GGYF+++G E+
Sbjct: 142 MLRSNRCILTNKSRKQQAFLQECPDDPGGYFIVRGAEK 179
>UniRef50_P15352 Cluster: DNA-directed RNA polymerase subunit B'';
n=16; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit B'' - Halobacterium salinarium (Halobacterium
halobium)
Length = 523
Score = 61.3 bits (142), Expect = 3e-08
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 9/153 (5%)
Frame = +3
Query: 201 QSLGAPHIDSFNYMLDDGLKFAIADLLPSEFEL---PSGEKVKVTIDEAAFAKPNVPMDT 371
+ L H S+N L+ G++ + + E ++ E V V + + P V +
Sbjct: 17 ERLAEHHFRSYNAFLEHGMQDVVTEKERIETDIGDKEDEEPVWVELGDVRAVTPRV-REA 75
Query: 372 VGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV------TIERSLGYLPIMIKSKM 533
G +++ P E R R TY + + +++ G T E +G +PIM+ S
Sbjct: 76 DG-SEELLYPQEARLRNITYSAPVFMEMSIVRGGEEEEERVLDTTETKVGRMPIMVGSDK 134
Query: 534 CHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
C+++ S EELIE E + GGYF+I G ER+
Sbjct: 135 CNISGFSDEELIEIGEDPADPGGYFIINGSERV 167
>UniRef50_P11513 Cluster: DNA-directed RNA polymerase subunit B;
n=68; Archaea|Rep: DNA-directed RNA polymerase subunit B
- Sulfolobus acidocaldarius
Length = 1126
Score = 59.3 bits (137), Expect = 1e-07
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 7/166 (4%)
Frame = +3
Query: 183 IANPYLQSLGA--PHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPN 356
IA + ++ G H+DSFN L + L+ I + E+P +K+ + + + KP+
Sbjct: 10 IAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEVPG---LKIKLGKIRYEKPS 66
Query: 357 VPMDTVGVKSQVVLPTECRQRAATYKGEL---KIRVTLCIDGRSVTIERSLGYLPIMIKS 527
+ G ++ P E R R TY + I V I+G + I +G LPIM+KS
Sbjct: 67 IRETDKGPMREIT-PMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIY--IGDLPIMLKS 123
Query: 528 KMCHLADLSPEELIEKNEHADEWGGYFVIKGHER--LARMLLVTRR 659
++L ++LIE E + GGYF++ G E+ +A+ L T R
Sbjct: 124 VADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNR 169
>UniRef50_UPI0000E487B4 Cluster: PREDICTED: similar to Polymerase
(RNA) III (DNA directed) polypeptide B; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
Polymerase (RNA) III (DNA directed) polypeptide B -
Strongylocentrotus purpuratus
Length = 830
Score = 58.8 bits (136), Expect = 2e-07
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Frame = +3
Query: 198 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG 377
++ L HIDSFNY ++ ++ + P + P+ + P+V ++
Sbjct: 52 VRGLVRQHIDSFNYFIN--VEVFSMNFAPLQSTFPAEALPYLQYLNIYVGSPDVE-ESFN 108
Query: 378 VKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSL--GYLPIMIKSKMCHLADL 551
+ ++ P ECR R TY + + + G+ I +L G +PIM++S C L
Sbjct: 109 I-TKPTSPHECRLRDMTYSAPITVDIEYT-RGQQRVIRNNLPIGRMPIMLRSSNCVLTGK 166
Query: 552 SPEELIEKNEHADEWGGYFVIKGHERL 632
SP EL + NE + GGYF+++G E++
Sbjct: 167 SPAELAKLNECPLDPGGYFIVRGTEKV 193
>UniRef50_Q7QXS5 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 1235
Score = 58.8 bits (136), Expect = 2e-07
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 1/209 (0%)
Frame = +3
Query: 219 HIDSFNYMLDDGLKFAIADLLPS-EFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVV 395
H++SFN +D L I P+ L + + +KV I P+
Sbjct: 57 HVNSFNDFIDS-LNTTIIKHAPAIVINLSTSKAIKVEIVNLTIKPPSFT----------- 104
Query: 396 LPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIKSKMCHLADLSPEELIEK 575
P R+ A Y G L + + + S T+ + G +P+M+ SK+C L + EE I
Sbjct: 105 -PAFARETRANYCGPLHVTLKVSDGPMSKTVVINAGDVPVMVGSKLCLLHGKTREERIRL 163
Query: 576 NEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLVRCVTSDQ 755
E + GGYF+ G +++ R+ L N P+A + + F+ GV + V D
Sbjct: 164 REDERDAGGYFISNGQDKVVRLYLDCLSNTPLAFTKYRSLSTISEFAPAGVHYKGVREDG 223
Query: 756 TSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
+ V+ + + F+ Y P
Sbjct: 224 HVYSTVIQARKDNFLSVKFTIDGRYIYVP 252
>UniRef50_P41558 Cluster: DNA-directed RNA polymerase subunit B'';
n=10; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit B'' - Methanococcus vannielii
Length = 499
Score = 58.4 bits (135), Expect = 2e-07
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Frame = +3
Query: 204 SLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVK 383
SL HIDS++ +++ ++ I ++ E E+ G KV+ + KP + + G
Sbjct: 15 SLVKHHIDSYDDFVENKIQGIIDEVTGVETEIKGG--YKVSFGKVRVTKP-INKEADGSV 71
Query: 384 SQVVLPTECRQRAATYKGELKIRVTLCI----DGRSVT-IERSLGYLPIMIKSKMCHLAD 548
++ P E R R Y L + + I + ++++ IE +G LP+M+ +K+CHL+
Sbjct: 72 KEIT-PMEARIRNLAYSAPLYLEMIPLIGEGDEEKTLSPIEVYIGELPVMLGAKICHLSG 130
Query: 549 LSPEELIEKNEHADEWGGYFVIKGHER 629
S E++I E + GYF++ G E+
Sbjct: 131 KSEEDMINYGEDPKDPLGYFIVNGSEK 157
>UniRef50_Q5CPZ8 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1287
Score = 58.0 bits (134), Expect = 3e-07
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Frame = +3
Query: 219 HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVL 398
HIDS+NY + ++ + + +A P + + + V +
Sbjct: 127 HIDSYNYFVTTEIQSIVRANANRMIRSDVDPSFFIEFLDARVGMPKLEENMITVD---LT 183
Query: 399 PTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIKSKMCHLADLSPEELIE 572
P CR R TY + + V + G +V +++ +G +P+M++SK+C L + E+++
Sbjct: 184 PMMCRMRDITYAAPIFVDVDY-VRGNTVVRKKNVEIGRIPVMLRSKVCILHGKTAAEMVK 242
Query: 573 KNEHADEWGGYFVIKGHERLARM 641
NE + GGYFV+KG E+ M
Sbjct: 243 LNECPHDPGGYFVVKGTEKAILM 265
>UniRef50_Q197F1 Cluster: Putative uncharacterized protein; n=1;
Aedes taeniorhynchus iridescent virus|Rep: Putative
uncharacterized protein - Aedes taeniorhynchus
iridescent virus
Length = 1140
Score = 56.8 bits (131), Expect = 7e-07
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 10/179 (5%)
Frame = +3
Query: 180 KIANPYLQSLG-APH-IDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP 353
KI Y ++ G H I++FN+ + GLK I + S + S + + P
Sbjct: 21 KIVADYFKTNGLVKHQIETFNHFISKGLKTIINN--ESSIKYQSHDNYSLKFTNIYVEYP 78
Query: 354 NVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCID---GRSVTIERS----LGYLP 512
++ D ++ + P E R + +Y G + + V ++ G+ I + +P
Sbjct: 79 SIIDDDRTIRD--LYPQEARNKDLSYTGNVCVNVIEMVENKEGKPPQISEQYRVPIAKIP 136
Query: 513 IMIKSKMCHLADLSPEELIEKNEHAD-EWGGYFVIKGHERLARMLLVTRRNYPVAIKRS 686
IM+ S +CHL+ +P E + N H+ + GGYF+I G ER+ + N PV +S
Sbjct: 137 IMLGSDVCHLSKYTPLENEQINGHSQADQGGYFIINGKERVLISQVRKAYNKPVCFVKS 195
>UniRef50_A2E3T5 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1142
Score = 55.6 bits (128), Expect = 2e-06
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Frame = +3
Query: 222 IDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLP 401
++SFN ++ GL ++ + E+ E +V I N+ +D +++Q++ P
Sbjct: 48 LNSFNDFIESGL----TKIMNANKEVIFSENPRVYI-----RYKNIYVDRPKIRNQILTP 98
Query: 402 TECRQRAATYKGELKIRVTLCIDGRSVTI--ERSLGYLPIMIKSKMCHLADLSPEELIEK 575
CR TY G + + ++G +V + + LPIM++S C+L + S E +
Sbjct: 99 QMCRLSDETYSGNVLVDYDF-VNGSTVKSFNNQCIAKLPIMLQSNRCYLYNASDETFAKY 157
Query: 576 NEHADEWGGYFVIKGHERLARM 641
+E + GGYFVI G ER+ +
Sbjct: 158 DECRYDPGGYFVINGTERVVHV 179
>UniRef50_Q0V2J9 Cluster: DNA-directed RNA polymerase; n=1;
Phaeosphaeria nodorum|Rep: DNA-directed RNA polymerase -
Phaeosphaeria nodorum (Septoria nodorum)
Length = 1137
Score = 54.8 bits (126), Expect = 3e-06
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Frame = +3
Query: 219 HIDSFNYMLDDGLKFAIAD--LLPSEFELPSGEKVKVTIDEAAFAKPN-VPMDTVGVKSQ 389
H+DS+N+ +D LK I + S+F+ K + + PN D +
Sbjct: 125 HVDSYNHFVDVELKKIIKANRFVRSDFD----PKFLLEYTDIRVLSPNRQEEDDLDNHRS 180
Query: 390 VVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS---LGYLPIMIKSKMCHLADLSPE 560
V P ECR R TY I V + S ++R+ +G +PIM+KS C LA +
Sbjct: 181 TVTPNECRLRDMTYAAP--IVVDIVYTRGSAKVKRTGIKIGRMPIMLKSNKCVLAAKNDR 238
Query: 561 ELIEKNEHADEWGGYFVIKGHERL 632
E+ +E + GGYF+ +G E++
Sbjct: 239 EMAVMDECPLDPGGYFITRGQEKV 262
>UniRef50_UPI000065EBB2 Cluster: DNA-directed RNA polymerase III
subunit 127.6 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase III subunit 2) (RPC2).; n=2;
Deuterostomia|Rep: DNA-directed RNA polymerase III
subunit 127.6 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase III subunit 2) (RPC2). - Takifugu rubripes
Length = 1206
Score = 54.4 bits (125), Expect = 4e-06
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Frame = +3
Query: 198 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP-NVPMDTV 374
++ L HIDSFNY ++ +K + + EK+ D + K N+ +
Sbjct: 1 VKGLVKQHIDSFNYFINVEIKKI----------MKANEKITSDADPMWYLKYLNIYVGMP 50
Query: 375 GVK-----SQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIKSKMC 536
V+ ++ V P ECR R TY + + + R + +G +PIM++S C
Sbjct: 51 DVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNC 110
Query: 537 HLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
L +P E + NE + GGYF++KG E++
Sbjct: 111 VLTGKTPMEFAKLNECPLDPGGYFIVKGQEKV 142
>UniRef50_Q9NW08 Cluster: DNA-directed RNA polymerase III subunit
RPC2; n=84; Eukaryota|Rep: DNA-directed RNA polymerase
III subunit RPC2 - Homo sapiens (Human)
Length = 1133
Score = 54.0 bits (124), Expect = 5e-06
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Frame = +3
Query: 198 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP-NVPMDTV 374
++ L HIDSFNY ++ +K + + EKV D + K N+ +
Sbjct: 36 VKGLVKQHIDSFNYFINVEIKKI----------MKANEKVTSDADPMWYLKYLNIYVGLP 85
Query: 375 GVK-----SQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIKSKMC 536
V+ ++ V P ECR R TY + + + R + +G +PIM++S C
Sbjct: 86 DVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNC 145
Query: 537 HLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
L +P E + NE + GGYF++KG E++
Sbjct: 146 VLTGKTPAEFAKLNECPLDPGGYFIVKGVEKV 177
>UniRef50_Q6DRH1 Cluster: RNA polymerase II subunit B; n=10;
Eukaryota|Rep: RNA polymerase II subunit B - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 562
Score = 53.6 bits (123), Expect = 6e-06
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Frame = +3
Query: 393 VLPTECRQRAATYKGELKIRVTLCI--DGRSVTIERS----LGYLPIMIKSKMCHLADLS 554
++P E R R TY L + +T I DG + +G +PIM++S C L+ L+
Sbjct: 108 MMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLT 167
Query: 555 PEELIEKNEHADEWGGYFVIKGHER--LARMLLVTRRNYPVAIKRSGWKMRG 704
+L E NE + GGYF+I G E+ +A+ + T Y A K S + G
Sbjct: 168 DRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTG 219
>UniRef50_Q236N3 Cluster: DNA-directed RNA polymerase, beta subunit
family protein; n=2; Oligohymenophorea|Rep: DNA-directed
RNA polymerase, beta subunit family protein -
Tetrahymena thermophila SB210
Length = 1141
Score = 53.2 bits (122), Expect = 8e-06
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 5/166 (3%)
Frame = +3
Query: 150 TSHPDYRKPPKIANPYLQSLG--APHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKV 323
T+ P R+ +I + YL G + HI SFNY ++ L+ I + E L + +
Sbjct: 5 TAEP-LREKTRIIDSYLAHNGFVSHHIQSFNYFINIKLQQIITSSMNKELRLDTDNSFLL 63
Query: 324 TIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER--S 497
+ P T ++LP E R ++Y G + + L +G+ R +
Sbjct: 64 EYTKIYIEPPAHDNKT------MMLPQEARLSNSSYAGNIYVDCELTFNGKKEDSLRKVN 117
Query: 498 LGYLPIMIKSKMCHLAD-LSPEELIEKNEHADEWGGYFVIKGHERL 632
+G +PIM+ S C+L L ++ + E A++ GYF+IKG E++
Sbjct: 118 IGKMPIMLGSSHCNLIKALELGQVHKLQECANDPRGYFIIKGVEKV 163
>UniRef50_Q6E6F3 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase - Antonospora
locustae (Nosema locustae)
Length = 1014
Score = 53.2 bits (122), Expect = 8e-06
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Frame = +3
Query: 393 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIKSKMCHLADLSP--E 560
VLP ECR R TY G + + + R V I+++ +G +PIM++S +CHL + E
Sbjct: 6 VLPEECRLRDLTYCGNIYVDIEYT-KHRKVIIKKNVFIGKVPIMLRSMLCHLEEKRDDCE 64
Query: 561 ELIEKNEHAD---EWGGYFVIKGHERL 632
+ E H + + GGYF++KG ER+
Sbjct: 65 TVRETYGHRECPLDMGGYFIVKGVERV 91
>UniRef50_Q54IZ9 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Dictyostelium discoideum AX4
Length = 1608
Score = 52.8 bits (121), Expect = 1e-05
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Frame = +3
Query: 219 HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVL 398
HIDSFN+ ++ +K + + V + P D + S +
Sbjct: 56 HIDSFNFFINVEMKKIVK--ANERLTAENDPSYFVRFTDINVGSPTSTEDNLD--SVQLT 111
Query: 399 PTECRQRAATYKGELKIRVTLCIDGRSVTI-ERSLGYLPIMIKSKMCHLADLSPEELIEK 575
P CR R TY + + + + + ++ + +G +PIM++S C L+ +PE++
Sbjct: 112 PQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAAL 171
Query: 576 NEHADEWGGYFVIKGHERL 632
E + GGYF+++G E++
Sbjct: 172 GECPMDPGGYFIVRGQEKV 190
>UniRef50_Q7SXI3 Cluster: Zgc:66298 protein; n=1; Danio rerio|Rep:
Zgc:66298 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 150
Score = 52.4 bits (120), Expect = 1e-05
Identities = 32/104 (30%), Positives = 51/104 (49%)
Frame = +3
Query: 123 LAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELP 302
L PSL + + + P + + +Q L HI+SF+ + DGL + + P EF L
Sbjct: 9 LKTEPSLKHLTEAGFGVPKEKQSVPVQELVKAHIESFDQAVTDGLCRVVEAIPPMEF-LY 67
Query: 303 SGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYK 434
G+++ ++ EA P+V + + V P ECR R TYK
Sbjct: 68 KGDRISLSFVEAIIHTPSVSKGGIS-RDLRVFPAECRGRRCTYK 110
>UniRef50_Q4Q6P8 Cluster: DNA-directed RNA polymerase II subunit 2,
putative; n=5; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit 2, putative - Leishmania major
Length = 1185
Score = 51.2 bits (117), Expect = 3e-05
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +3
Query: 393 VLPTECRQRAATYKGELKIRVTLCI-----DGRSVTIERS--LGYLPIMIKSKMCHLADL 551
+ P ECR R TY + ++ + + + D T R+ LG +PIM+KS C+L+
Sbjct: 124 LFPNECRLRDMTYDAQAQVTLGVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGK 183
Query: 552 SPEELIEKNEHADEWGGYFVIKGHERL 632
+EL NE + GGYFVI G E++
Sbjct: 184 DEDELPRLNECPHDQGGYFVINGTEKV 210
>UniRef50_P08266 Cluster: DNA-directed RNA polymerase II subunit
RPB2; n=12; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB2 - Drosophila melanogaster (Fruit fly)
Length = 1176
Score = 51.2 bits (117), Expect = 3e-05
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 20/210 (9%)
Frame = +3
Query: 111 NPKKLAQNPSLAYTSHPDYRKPPKIA-NPYLQSLGA--PHIDSFNYMLDDGLKFAIADL- 278
N ++L + + SH +++ I N Y G +DSF+ + ++ + D
Sbjct: 5 NEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 64
Query: 279 ---LPSEFELPSGE-----KVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYK 434
L +E + SGE + + ++ +KP + G S + +P E R R TY
Sbjct: 65 AIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPT-HWEKDGSPSPM-MPNEARLRNLTYS 122
Query: 435 GELKIRVTLC-----IDGRSVTIERS-LGYLPIMIKSKMCHLADLSPEELIEKNEHADEW 596
L + +T +D +++ +G +PIM++S C L+ L+ +L E NE +
Sbjct: 123 APLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDP 182
Query: 597 GGYFVIKGHER--LARMLLVTRRNYPVAIK 680
GGYF+I G E+ +A+ + T Y ++K
Sbjct: 183 GGYFIINGSEKVLIAQEKMATNTVYVFSMK 212
>UniRef50_P30876 Cluster: DNA-directed RNA polymerase II subunit
RPB2; n=745; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB2 - Homo sapiens (Human)
Length = 1174
Score = 50.4 bits (115), Expect = 6e-05
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Frame = +3
Query: 393 VLPTECRQRAATYKGELKIRVTLCI--DGRSVTIERS----LGYLPIMIKSKMCHLADLS 554
++P E R R TY L + +T + +G + +G +PIM++S C L L+
Sbjct: 108 MMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLT 167
Query: 555 PEELIEKNEHADEWGGYFVIKGHER--LARMLLVTRRNYPVAIKRSGWKMRG 704
+L E NE + GGYF+I G E+ +A+ + T Y A K S + G
Sbjct: 168 DRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTG 219
>UniRef50_Q98RY5 Cluster: DNA-directed RNA polymerase; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase -
Guillardia theta (Cryptomonas phi)
Length = 1206
Score = 50.0 bits (114), Expect = 8e-05
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Frame = +3
Query: 282 PSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTL 461
P +L S ++ + + + +KP D G+ +V P E R R TY L ++
Sbjct: 58 PGNDDLLSKIRMVIRLGQLHLSKPTYIEDD-GLVHNLV-PNEARLRNLTYSSPLYCEIST 115
Query: 462 CIDGRSVTIERSL---------GYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVI 614
I +I+ L G +PIMIKSK C L++L + L E D+ GGYF++
Sbjct: 116 SIIKNEKSIDYILKQFSEKILIGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIV 175
Query: 615 KGHERL 632
G E++
Sbjct: 176 NGSEKV 181
>UniRef50_Q8SQY8 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA
polymerase - Encephalitozoon cuniculi
Length = 1110
Score = 50.0 bits (114), Expect = 8e-05
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 12/150 (8%)
Frame = +3
Query: 219 HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVL 398
HI+S++Y +D +K + + ++ +K + A P+V + V V
Sbjct: 23 HIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYL--DIRVAMPSVEENMVNYN---VF 77
Query: 399 PTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIKSKMCHL--ADLSPEE- 563
P ECR R TY + + + + R + ++R +G +P+M++S CHL P E
Sbjct: 78 PIECRLRDITYSANIYVDIEY-VRNRQIIVKRDVCIGKMPVMLRSSRCHLRRETKGPMEG 136
Query: 564 -------LIEKNEHADEWGGYFVIKGHERL 632
+ E E + GGYF+++G ER+
Sbjct: 137 RKTKDRRIRESQECPLDVGGYFIVRGIERV 166
>UniRef50_UPI00004998DA Cluster: DNA-directed RNA polymerase
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1170
Score = 48.8 bits (111), Expect = 2e-04
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Frame = +3
Query: 309 EKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRV--TLCIDGRS- 479
E+ + + + F P V T S + P E R R+ TY +L+++ T+ +G
Sbjct: 70 EEHTIVLTDPIFHFPKV--STGSKASASLFPHEARLRSLTYSCQLEVKAKDTIRKNGAEE 127
Query: 480 -VTIER-SLGYLPIMIKSKMCHLAD-LSPEELIEKNEHADEWGGYFVIKGHERL 632
T+ + + +P M+KS +C L ++ +I K+E + E GGYF+IKG E++
Sbjct: 128 ITTVPKIDIASIPSMLKSDVCRLKRCVTQPSMINKDECSFEQGGYFIIKGSEKV 181
>UniRef50_A5DHT2 Cluster: DNA-directed RNA polymerase II subunit
RPB2; n=652; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB2 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1236
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +3
Query: 498 LGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
LG +PIM++SK C L DL E E E + GGYFVI G E++
Sbjct: 160 LGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGSEKV 204
>UniRef50_A3AIW8 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 231
Score = 47.2 bits (107), Expect = 5e-04
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Frame = +3
Query: 183 IANPYLQSLGAP---HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP 353
+ +P +SL AP +D F +L LK A P +P+ ++ ++ +
Sbjct: 38 LPSPTYRSLAAPVTKPVDKFA-LLPAFLKVAP----PPTCIIPASLLIRFDAIQSLYNSV 92
Query: 354 NVPMDTVGVK--SQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS----LGYLPI 515
V + +V V+ ++ + P CR TY + + + G+ ++R +GYLPI
Sbjct: 93 RVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTV-GKQYELKRKPNFIIGYLPI 151
Query: 516 MIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
M++S C L EL E + GGYF++KG E++
Sbjct: 152 MLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKV 190
>UniRef50_Q03587 Cluster: DNA-directed RNA polymerase subunit B;
n=12; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit B - Thermoplasma acidophilum
Length = 1195
Score = 46.8 bits (106), Expect = 7e-04
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Frame = +3
Query: 348 KPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER-SLGYLPIMIK 524
KP + + G +Q+ P E R R Y + +++ + DG E +G LP+M++
Sbjct: 89 KPEIK-EASGASNQIT-PNEARLRDLNYLAPVTLKLRIVEDGIEKGSEIIKVGDLPVMVR 146
Query: 525 SKMCHLADLSPEELIEKN----------------EHADEWGGYFVIKGHERL 632
SK+C L++ + ++ IEKN E D+ GGYF+I G ER+
Sbjct: 147 SKICTLSEENLDQYIEKNNGPIGLSRREKLQYVGEDPDDPGGYFIIGGSERV 198
>UniRef50_Q4ZJA8 Cluster: DNA-directed RNA polymerase; n=3;
Lymphocystivirus|Rep: DNA-directed RNA polymerase - Fish
lymphocystis disease virus (FLDV)
Length = 1018
Score = 46.4 bits (105), Expect = 0.001
Identities = 37/150 (24%), Positives = 73/150 (48%)
Frame = +3
Query: 393 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIKSKMCHLADLSPEELIE 572
+ P E +Q+ TY + I + +G+S +E + LP+M++SK+C +++ + E
Sbjct: 50 ITPLEAKQKDLTYA--ISINYEIDFNGKSTILE--IFSLPLMLRSKLCLTNNVAHQTTFE 105
Query: 573 KNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLVRCVTSD 752
+ + GGYF++KG ER+ + R N P+ +K + D L ++
Sbjct: 106 LCPN--DPGGYFIVKGKERVLIPHIRPRYNVPM-VK----------YEDGFYLCEFRSAS 152
Query: 753 QTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
+T ++ ++ T+G L FS + + P
Sbjct: 153 ETGSSTLIQARTDGKIVLEFSLPYIKQFVP 182
>UniRef50_Q4A245 Cluster: Putative DNA-directed RNA polymerase II
subunit; n=1; Emiliania huxleyi virus 86|Rep: Putative
DNA-directed RNA polymerase II subunit - Emiliania
huxleyi virus 86
Length = 1156
Score = 46.4 bits (105), Expect = 0.001
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Frame = +3
Query: 183 IANPYLQSLG--APHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPN 356
+ Y+ S+ A I+S+++ +++ L + I++ + SG KV+ F P+
Sbjct: 12 VIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISYMHSSG---KVS-HHVHFTNPS 67
Query: 357 VPMDTVGVKS---QVVLPTECRQRAATYKGELKI-----RVTLCID-----GRSVTIERS 497
V + + + P R R TY + + R+ + R V
Sbjct: 68 VNRPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLINRKVFRNVI 127
Query: 498 LGYLPIMIKSKMCHLADLSPEEL---IEKNEHADEWGGYFVIKGHER 629
+ +P+M++SK+C+LAD+S +L +K+E + GGYF+I G+E+
Sbjct: 128 IAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEK 174
>UniRef50_Q06VE3 Cluster: RNA polymerase subunit; n=3;
Ascovirus|Rep: RNA polymerase subunit - Trichoplusia ni
ascovirus 2c
Length = 1160
Score = 45.2 bits (102), Expect = 0.002
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Frame = +3
Query: 222 IDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLP 401
+DSF LD+ I +L E L G +V + + F P+ ++ + S+ + P
Sbjct: 25 LDSFTSFLDN-----IRTVLHDEPPLVIGGEV-IRFENVTFLTPSYLVNGI---SKTLYP 75
Query: 402 TECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIKSKMCHLADLSPEELIEKN 578
+ R + Y+ + + V G R +E L LP M+ S+MC+L +S EL+
Sbjct: 76 SIARMKGLNYEFTMCVDVINETTGVRDNGVE--LCQLPCMVGSEMCNLKGMSDAELLTHG 133
Query: 579 EHADEWGGYFVIKGHERLARMLLVTRRNYPVAIK 680
E GGYF+ G ER+ + N P+ K
Sbjct: 134 EILGIPGGYFIHNGVERVLIGHIKPAYNTPIVYK 167
>UniRef50_P08518 Cluster: DNA-directed RNA polymerase II subunit
RPB2; n=1329; Fungi|Rep: DNA-directed RNA polymerase II
subunit RPB2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1224
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +3
Query: 498 LGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
+G LPIM++SK C+L++ + +L + E + GGYF+I G E++
Sbjct: 167 IGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKV 211
>UniRef50_Q1L6B6 Cluster: RNA polymerase II second largest subunit;
n=45; Magnoliophyta|Rep: RNA polymerase II second
largest subunit - Nepenthes maxima
Length = 667
Score = 44.4 bits (100), Expect = 0.004
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Frame = +3
Query: 381 KSQVVLPTECRQRAATYKGELKIRVTLCI-----DGRSVTIERS-----LGYLPIMIKSK 530
++ + P R R TY L + VT + DG V+ + +G +PIM++S
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVSEAQDFTKVFIGKVPIMLRSS 60
Query: 531 MCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
C L S ++L E E + GGYF+I G E++
Sbjct: 61 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 94
>UniRef50_A7AM79 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Babesia bovis
Length = 1171
Score = 42.3 bits (95), Expect = 0.015
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Frame = +3
Query: 198 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG 377
++ + HI+S+N + +K + PS L S K I+ M
Sbjct: 49 MRGIARQHINSYNNFVLREIKEIVN--APSNKMLKSDACKKFYIEFIDINVGEPTMSENN 106
Query: 378 VKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER-SLGYLPIMIKSKMCHLA--- 545
K ++ P CR R TY + + V +G V +R +G LP+M++S +C L+
Sbjct: 107 NKPILLTPQLCRMRDITYSAPMYVDVEY-YNGEGVASKRVEIGRLPVMLRSCVCALSGGM 165
Query: 546 ----DLSPEELIEK-NEHADEWGGYFVIKGHERLARM 641
++ EL + E + GGYF+IKG E++ M
Sbjct: 166 RANGNVDNFELSSRLGECPYDPGGYFIIKGVEKVILM 202
>UniRef50_Q9LK40 Cluster: DNA-directed RNA polymerase; n=29;
Spermatophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1172
Score = 41.5 bits (93), Expect = 0.027
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 498 LGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHER--LARMLLVTRRNYPV 671
+G +P+M+KS +C ++ E +K + A + GGYFVIKG E+ +A+ + T+R +
Sbjct: 173 IGSIPVMVKSILCKTSEKGKENC-KKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLW-- 229
Query: 672 AIKRSGW 692
I S W
Sbjct: 230 -ISNSPW 235
>UniRef50_Q7QSN9 Cluster: DNA-directed RNA polymerase; n=2; Giardia
intestinalis|Rep: DNA-directed RNA polymerase - Giardia
lamblia ATCC 50803
Length = 1293
Score = 41.5 bits (93), Expect = 0.027
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Frame = +3
Query: 195 YLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTV 374
Y + L A IDS+N+ + +K +A P ++ E +F+ P + + V
Sbjct: 22 YCRGLAAMQIDSYNHFVKHTMKNIMASFPP--IQVTRTENFCCYNHILSFSDPQLEPN-V 78
Query: 375 GVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS----------VTIERSL---GYLPI 515
+K P +CR ++++Y +K++++ I S VT E L P+
Sbjct: 79 HIK-----PNDCRIQSSSYMAAIKVKISYTIQQYSFSNNEGLVQEVTYEPKLIDFCLFPV 133
Query: 516 MIKSKMCHL-------ADLSPEELIEKNEHADEWGGYFVIKGHER 629
M+ S +C+L +D+ +I DE GGYF+I+G E+
Sbjct: 134 MVNSCLCYLNTNKVAGSDIKAHRIINDECPYDE-GGYFIIRGAEK 177
>UniRef50_O96236 Cluster: DNA-directed RNA polymerase; n=10;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum (isolate 3D7)
Length = 1364
Score = 41.5 bits (93), Expect = 0.027
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Frame = +3
Query: 366 DTVGVKSQVVLPTECRQRAATYKGELKIRV---TLCIDG---RSVTIER------SLGYL 509
D + ++ + P E R R TY + I + T ID + V E+ +LG +
Sbjct: 110 DEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPVLKEKFIYERINLGRI 169
Query: 510 PIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
P+M+KS C L E+ + E + + GGYF++ G E++
Sbjct: 170 PLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKV 210
>UniRef50_Q3LW27 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1159
Score = 41.1 bits (92), Expect = 0.036
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Frame = +3
Query: 393 VLPTECRQRAATYKGELKIRVTLCI-DGRSVTIERS----------LGYLPIMIKSKMCH 539
+ P + R R TY +++I+V I D +++ +G P MIKS C+
Sbjct: 98 ISPNKSRLRNITYSSKVRIQVFDEITDKHDANLKKKVVNKSKKFIYIGKFPCMIKSDTCY 157
Query: 540 LADLSPEELIEKNEHADEWGGYFVIKGHER--LARMLLVTRRNY 665
L + S L +E + GGYF+I G+E+ +A+ LV + Y
Sbjct: 158 LNNFSEISLARNDECPFDEGGYFIINGNEKVLVAQERLVKNKVY 201
>UniRef50_Q4U9X1 Cluster: DNA-directed RNA polymerase; n=26;
Eukaryota|Rep: DNA-directed RNA polymerase - Theileria
annulata
Length = 1223
Score = 40.3 bits (90), Expect = 0.062
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Frame = +3
Query: 288 EFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVT--- 458
E E+ + K+ + + +KP+V + GV + P E R R TY ++ I +
Sbjct: 111 EEEVENSVVYKLKFGQLSLSKPSVE-EKDGVFKHI-WPQEARLRNLTYASQVYIDIEQET 168
Query: 459 -LCIDGRSVTIERS------LGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIK 617
+ DG+ + + L +P+M KS C L+ ++L + E + GGYFV+
Sbjct: 169 YINEDGKLTQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDQDLSDIGECVFDQGGYFVVN 228
Query: 618 GHERL 632
G ER+
Sbjct: 229 GGERV 233
>UniRef50_Q5KIB7 Cluster: DNA-directed RNA polymerase; n=72;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 1193
Score = 39.9 bits (89), Expect = 0.082
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 495 SLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
S+G +P+M++S C L L ++ E E + GGYF+I G E++
Sbjct: 193 SIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKV 238
>UniRef50_Q98S96 Cluster: DNA-directed RNA polymerase; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase -
Guillardia theta (Cryptomonas phi)
Length = 1049
Score = 39.5 bits (88), Expect = 0.11
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +3
Query: 393 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGY-LPIMIKSKMCHLADLSPEELI 569
V P R + TY ++ + + I+ + I +L + +P+M+K C L + I
Sbjct: 69 VTPFHSRIKDTTYSIDIYSDLFIRINNKKKFINNNLIFKIPLMLKCNRCILYGKKEDFYI 128
Query: 570 EKNEHADEWGGYFVIKGHERL 632
+ NE + GGYF+IKG E++
Sbjct: 129 KINECPLDPGGYFIIKGTEKV 149
>UniRef50_Q23G41 Cluster: DNA-directed RNA polymerase, beta subunit
family protein; n=4; Oligohymenophorea|Rep: DNA-directed
RNA polymerase, beta subunit family protein -
Tetrahymena thermophila SB210
Length = 1226
Score = 39.5 bits (88), Expect = 0.11
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +3
Query: 507 LPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
LP+M++S C LA + E I+ E + GGYF+IKG E++
Sbjct: 184 LPVMVQSMYCSLAGENLEGRIKHGECQFDQGGYFIIKGSEKV 225
>UniRef50_A2E7H8 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1177
Score = 37.5 bits (83), Expect = 0.44
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3
Query: 507 LPIMIKSKMCHLADLSPEELIEKNEHADEW--GGYFVIKGHERL 632
+P+MI+S+ CHL++ + I N + ++ GGYF++ G E++
Sbjct: 153 VPVMIRSEYCHLSNHRDDRAINDNLNECDYDPGGYFIVNGSEKV 196
>UniRef50_Q3WFD0 Cluster: Twin-arginine translocation pathway
signal; n=1; Frankia sp. EAN1pec|Rep: Twin-arginine
translocation pathway signal - Frankia sp. EAN1pec
Length = 472
Score = 35.5 bits (78), Expect = 1.8
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 543 ADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSG-WKMRGNLFSD 719
ADL+P +LIE E D + + + HE LA ++ R A+ R G W R L +
Sbjct: 171 ADLAPPKLIEIEEDIDRFAAEYTLHPHEILAPQVVQRWRQVDAALGRRGSWAARRRLTAA 230
Query: 720 YGVL 731
G L
Sbjct: 231 AGRL 234
>UniRef50_Q3LW79 Cluster: Second-largest subunit of RNA polymerase
III; n=1; Bigelowiella natans|Rep: Second-largest
subunit of RNA polymerase III - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 1074
Score = 34.7 bits (76), Expect = 3.1
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 495 SLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHER 629
+LG +PI+++S C L ++ I E + GGYF++KG ER
Sbjct: 121 NLGNIPILLRSLKCILNYAQVKKSICYGECPLDLGGYFILKGKER 165
>UniRef50_P42487 Cluster: DNA-directed RNA polymerase subunit 2;
n=1; African swine fever virus BA71V|Rep: DNA-directed
RNA polymerase subunit 2 - African swine fever virus
(strain BA71V) (ASFV)
Length = 1242
Score = 34.3 bits (75), Expect = 4.1
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 510 PIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRN 662
PIM S CH LS E E +E GGYF+ +G E + +L R N
Sbjct: 161 PIMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLENIRFN 211
>UniRef50_A2YRP1 Cluster: DNA-directed RNA polymerase; n=39;
Magnoliophyta|Rep: DNA-directed RNA polymerase - Oryza
sativa subsp. indica (Rice)
Length = 1347
Score = 33.9 bits (74), Expect = 5.4
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +3
Query: 318 KVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS 497
+V ++E F N +D +K + P R + TY ++K+ +T+ + + +
Sbjct: 285 RVELEEPVFWVDNCDLDVETLKLK---PKHARLQKMTYSSKMKVEMTVQVYSLHKSDKAK 341
Query: 498 LGYLP-IMIKSKMCHLADLSPEEL-IEKNEHADEWGGYFVIKGHERL 632
G P I K M ++ +L + ++E ++GGYF+IKG E++
Sbjct: 342 TGEDPYIQRKHIMKETKWVTIGKLPVMESECEYDFGGYFLIKGMEKV 388
>UniRef50_Q60J73 Cluster: Putative uncharacterized protein CBG24658;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG24658 - Caenorhabditis
briggsae
Length = 1381
Score = 33.5 bits (73), Expect = 7.1
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +3
Query: 174 PPKIANPYLQSLGAPHIDSFNY------MLDDGLKFAIADLLPSEFELPSGEKVKVTIDE 335
PP NPY GAP + + L+DG+ F + +LP E+ + ++ ++ +
Sbjct: 1003 PPPRGNPYAPPEGAPRVPNRLIGKPRILCLEDGISFEVKTILPLSGEVFANDRKRIPECQ 1062
Query: 336 AAF---AKPNV--PMDTVGVKS 386
F AKP V P T GV++
Sbjct: 1063 KTFTEDAKPKVFLPFATCGVRN 1084
>UniRef50_Q4Q3P2 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1378
Score = 33.5 bits (73), Expect = 7.1
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 300 PSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS 479
PSGE D A P +TVGV S PT AT + E ++R+ +C+DG +
Sbjct: 650 PSGEAAARKADVPAAPAVEKPAETVGVASDAT-PT------ATLESEKQVRLVVCVDGTA 702
Query: 480 VTI 488
+
Sbjct: 703 TVL 705
>UniRef50_A4XAI2 Cluster: Trigger factor; n=2; Salinispora|Rep:
Trigger factor - Salinispora tropica CNB-440
Length = 465
Score = 33.1 bits (72), Expect = 9.4
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +3
Query: 198 LQSLGAPHIDSFNYMLDDGLKF-AIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTV 374
L++LG P ++ + D L F A D+ P E LP V+VT+DE +
Sbjct: 102 LKTLGRPEVEITEFADGDSLNFTAEVDIRP-ELTLPDLSTVEVTVDELKIDDSEIDEQVQ 160
Query: 375 GVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV 482
++ + + +RAA ++I + +DG V
Sbjct: 161 SLRERFA-TLKTVERAAGEGDFVQIDLNATVDGEEV 195
>UniRef50_O18117 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 1262
Score = 33.1 bits (72), Expect = 9.4
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +3
Query: 174 PPKIANPYLQSLGAPHIDSFNY------MLDDGLKFAIADLLPSEFELPSGEKVKVTIDE 335
PP NPY GAP + + L+DG+ F + +LP E+ + ++ +V
Sbjct: 887 PPPRNNPYAPPEGAPRVPNRLIGKPRILCLEDGISFEVKTILPLTGEVFANDRKRVLECH 946
Query: 336 AAF---AKPN--VPMDTVGVKS 386
+F AKP +P T GVK+
Sbjct: 947 KSFTEEAKPKMFLPFSTCGVKN 968
>UniRef50_Q0CFH3 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 682
Score = 33.1 bits (72), Expect = 9.4
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 475 LPSMHRVTLIFNSPLYVAALCRHSVGRT--T*DLTPTVSIGTLGLANAASSIVTLTF 311
+P++H T P Y L +VG + T D + T IG +G SSI+T+TF
Sbjct: 233 IPAIHMPTYAATEPTYPLLLTMMAVGSSFITEDRSSTAKIGHIGDHTLDSSIMTITF 289
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,212,864
Number of Sequences: 1657284
Number of extensions: 17355607
Number of successful extensions: 40401
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 38862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40330
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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