Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L21
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...   165   5e-42
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    55   2e-08
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    44   3e-05
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    29   0.86 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.86 
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    29   1.1  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   1.1  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    27   3.5  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   6.1  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   6.1  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    26   8.0  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score =  165 bits (402), Expect = 5e-42
 Identities = 91/240 (37%), Positives = 128/240 (53%), Gaps = 14/240 (5%)
 Frame = +3

Query: 165 YRKPPKIAN--PYLQSLGAPHIDSFNYMLDDGL----------KFAIADLLPSEF-ELPS 305
           ++ PPK     P LQ    PH+DSFN + + GL          K A   +   E   L  
Sbjct: 65  FKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKF 124

Query: 306 GEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVT 485
           G K+   +DE   AKP +        ++ V P E R+R  TYK  L ++ +  ++G    
Sbjct: 125 GNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQ 184

Query: 486 IE-RSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRN 662
            E R +G +PIM++S  CHL  LSP ELI   E ++E GGYF++ G E+L RML++ +RN
Sbjct: 185 SEMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRN 244

Query: 663 YPVAIKRSGWKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
           +P AI R  +  RG  +S YG+ +RCV  DQ+S  N LH+L NG     F +RK  Y  P
Sbjct: 245 HPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLIP 304


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
 Frame = +3

Query: 198 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG 377
           ++ L   H+DS+NY +D  LK  +        ++     +K  +D    A      D + 
Sbjct: 60  VKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWFYLKY-LDIRVGAPVRTDADAIQ 118

Query: 378 VKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIKSKMCHLADL 551
                + P ECR R  TY   + + +     G+ V   R+  +G +P+M++S  C L+  
Sbjct: 119 AS---ISPHECRLRDLTYGANIYVDIEYT-RGKQVVRRRNVPIGRMPVMLRSNKCVLSGK 174

Query: 552 SPEELIEKNEHADEWGGYFVIKGHERL 632
           +  E+   NE   + GGYF++KG E++
Sbjct: 175 NEMEMAALNECPLDPGGYFIVKGTEKV 201


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = +3

Query: 498 LGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 632
           +G +PIM++S  C L  +S  EL + NE   + GGYF+I G E++
Sbjct: 152 IGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKV 196


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 710 LLRLWSISTLRHLRSDQHEQCSTFPN 787
           +LR+W++    H RS   E CS+ PN
Sbjct: 261 ILRIWAVLDSEHARSVASETCSSDPN 286


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 114  PKKLAQNPSLAYTSHPDYR-KPPKIANPYLQSLGAPHIDSFNYMLDDGLK-FAIADLL 281
            P  L +  +L +  HP+   KP  +  P  ++  A HID  +   D G   F + +LL
Sbjct: 902  PNMLLKEANLYHLQHPEIPLKPDSLLGPEEENATASHIDGSSNASDSGYNAFVLKELL 959


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -3

Query: 184 IFGGFL*SGWLVYANDGFWASFFGFMLI*LR 92
           I+  FL S  LVYAN+GF     GF L  LR
Sbjct: 244 IYKNFLHSAKLVYANEGFRGFLDGFFLRVLR 274


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 654 RRNYPVAIK--RSGWKMRGNLFSDYGVLVRCVTSDQTSTNNVLHFLTN 791
           +R   VAIK  ++  K  G    + G+L R   +D    NNV+ +L++
Sbjct: 539 KRGQVVAIKVIKNRQKFHGQTLVEVGILKRLCEADPADKNNVIRYLSH 586


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 279 LPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECR 413
           LP  F+L     VK+ + +A  A+ N+P   V    + + P + R
Sbjct: 140 LPKTFQLDESSVVKILLRKAKVAQENLPPSIVTELKKQLAPLDLR 184


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 260 LQAIVQHIIE*IYVRRSKTLKVRICYFW 177
           L +I+ H+I  +   R+K LK  + Y+W
Sbjct: 49  LPSILMHVIRFVMPSRNKELKKLLYYYW 76


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -3

Query: 382 LTPTVSIGTLGLANAASSIVTLTFSPL----GNSNSDGN 278
           +TP  S+G L   N+ S + TLT SP+     N+++DG+
Sbjct: 31  MTPP-SMGALNANNSNSQLSTLTISPMTYLANNTSTDGS 68


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +2

Query: 743 HLRSDQHEQCSTFPNEWHVQXDVLVPKDDVLRSPYSLLN 859
           +LR  ++   S +P+++ +   +L   DDV ++P+S+ +
Sbjct: 25  NLRRKENFLKSRYPSKFDLNVSMLTKSDDVGKTPFSIFD 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,581,590
Number of Sequences: 5004
Number of extensions: 75093
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)