Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L21
         (870 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10969| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   7e-05
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   3.7  
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)                  29   6.5  
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)                     28   8.6  
SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)            28   8.6  

>SB_10969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
 Frame = +3

Query: 279 LPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVT 458
           + S+ E+P+   +K   ++   +KP    +  G  S + +P E R R  TY     + +T
Sbjct: 78  MTSDTEIPARFVLK--FEQIYLSKPT-HWEKDGAPSPM-MPNEARLRNLTYSAPFYVDIT 133

Query: 459 LCI----DGRSVTIERSL--GYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKG 620
                  +   VT    +  G +PIM++S  C L  L   +L E NE   + GGYF+I G
Sbjct: 134 KTRIKDNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIING 193

Query: 621 HER--LARMLLVTRRNYPVAIKRSGWKMRGNLFS 716
            E+  +A+  + T   Y  + K S +     + S
Sbjct: 194 SEKVLIAQEKMATNTVYVFSKKDSKYSYTAEIRS 227


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 643 CWLHEGTTLWPSSGQDG 693
           CW HEG   WP  G +G
Sbjct: 308 CWYHEGFERWPEYGHEG 324


>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
          Length = 829

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 108 MNPKKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPS 287
           +NP  L   P  + TS    R+ P +ANP   S G+ H D  +  +    K   +  L +
Sbjct: 244 VNPSSLVSGPVNSETSEGKARETPDLANP--NSSGSYHEDKKHVTMTTAAKSRSSTTLGT 301

Query: 288 EFELPSG 308
           E  L  G
Sbjct: 302 EDVLSVG 308


>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 948

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 617 GP*ASSPYVVGYTKELPCGHQAVRMEDARKSLLRLWSISTLRHLRSDQH 763
           GP  ++PY++G T   P  H+A+  + + +S     S+S     +S  H
Sbjct: 546 GPTDTTPYLIGQTAPNPPEHEAIPQQLSSESSAATSSVSMFTVSQSPSH 594


>SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)
          Length = 261

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 333 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKI 449
           + +F KP +P+   G +S   +PT  ++R  T+    +I
Sbjct: 121 QRSFGKPKIPLLMAGKESYAPVPTPAKRRRLTHIAHARI 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,720,441
Number of Sequences: 59808
Number of extensions: 539791
Number of successful extensions: 1367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)