Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L21
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr... 163 1e-40
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr... 57 2e-08
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 52 4e-07
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z68315-5|CAE48501.1| 689|Caenorhabditis elegans Hypothetical pr... 31 1.4
AY037802-1|AAK94767.1| 669|Caenorhabditis elegans GLY-2 protein. 30 2.5
AY037800-1|AAK94765.1| 661|Caenorhabditis elegans GLY-2 protein. 30 2.5
AF154122-1|AAF74523.1| 669|Caenorhabditis elegans N-acetylgluco... 30 2.5
AC006625-9|AAK68273.1| 669|Caenorhabditis elegans Glycosylation... 30 2.5
AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical... 29 3.3
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 4.3
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 4.3
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 4.3
AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical... 28 10.0
AC006697-1|AAF60390.2| 278|Caenorhabditis elegans Hypothetical ... 28 10.0
>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
protein F14B4.3 protein.
Length = 1127
Score = 163 bits (396), Expect = 1e-40
Identities = 81/211 (38%), Positives = 128/211 (60%), Gaps = 3/211 (1%)
Frame = +3
Query: 219 HIDSFNYMLDDGLKFAIADLLPSE-FELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQV- 392
H+DSF++++ G +FA A +P+E F L +G+ V + A KP + +
Sbjct: 9 HVDSFDFLVSKGCQFA-AQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLP 67
Query: 393 VLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIKSKMCHLADLSPEELI 569
+LP ECRQR TY G LK+ + + ++G R IE LG +PIM++S+ CHL +S +EL+
Sbjct: 68 LLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELV 127
Query: 570 EKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWKMRGNLFSDYGVLVRCVTS 749
E E GGYF++ G E++ R+L+ RRN+P+AI R +K +G LFS++GV++R V
Sbjct: 128 VAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKE 187
Query: 750 DQTSTNNVLHFLTNGTCXLMFSYRKMMYYAP 842
+ T+ LH+L GT L +R+ ++Y P
Sbjct: 188 NHTAVMMTLHYLDTGTMQLALQFRREIFYVP 218
>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
protein F09F7.3 protein.
Length = 1154
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 393 VLPTECRQRAATYKGELKIRVTLCIDGRSV-TIERSLGYLPIMIKSKMCHLADLSPEELI 569
+ P ECR R TY + + + + V + +G +PIM++S C L DL+ EEL
Sbjct: 100 ITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRSSKCILRDLAEEELA 159
Query: 570 EKNEHADEWGGYFVIKGHERL 632
E + GGYFV+KG E++
Sbjct: 160 RVQECPYDPGGYFVVKGSEKV 180
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 52.4 bits (120), Expect = 4e-07
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Frame = +3
Query: 393 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS-----LGYLPIMIKSKMCHLADLSP 557
++P E R R TY L + +T + E+ +G +P+M++S C L++++
Sbjct: 115 MMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTD 174
Query: 558 EELIEKNEHADEWGGYFVIKGHER--LARMLLVTRRNYPVAIK 680
+L E NE + GGYFVI G E+ +A+ + T Y ++K
Sbjct: 175 RDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMK 217
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical protein
T23F1.5 protein.
Length = 1262
Score = 33.1 bits (72), Expect = 0.27
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +3
Query: 174 PPKIANPYLQSLGAPHIDSFNY------MLDDGLKFAIADLLPSEFELPSGEKVKVTIDE 335
PP NPY GAP + + L+DG+ F + +LP E+ + ++ +V
Sbjct: 887 PPPRNNPYAPPEGAPRVPNRLIGKPRILCLEDGISFEVKTILPLTGEVFANDRKRVLECH 946
Query: 336 AAF---AKPN--VPMDTVGVKS 386
+F AKP +P T GVK+
Sbjct: 947 KSFTEEAKPKMFLPFSTCGVKN 968
>Z68315-5|CAE48501.1| 689|Caenorhabditis elegans Hypothetical
protein F28C6.4b protein.
Length = 689
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 195 TDLLFLAVFYNLGGLCTPMMGSGLVFLDSC*FNYVLTFIFLIYN 64
+ +L L V YN+G L + + + F+ C ++ TFI +I+N
Sbjct: 604 SQILLLLVIYNMGKLFSKLNLGSVEFVTLCMSSFFYTFINIIFN 647
>AY037802-1|AAK94767.1| 669|Caenorhabditis elegans GLY-2 protein.
Length = 669
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +3
Query: 189 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 293
NPY++ +G PH +D FN + L++ +K AI+ L P F
Sbjct: 493 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 530
>AY037800-1|AAK94765.1| 661|Caenorhabditis elegans GLY-2 protein.
Length = 661
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +3
Query: 189 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 293
NPY++ +G PH +D FN + L++ +K AI+ L P F
Sbjct: 485 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 522
>AF154122-1|AAF74523.1| 669|Caenorhabditis elegans
N-acetylglucosaminyltransferase V protein.
Length = 669
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +3
Query: 189 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 293
NPY++ +G PH +D FN + L++ +K AI+ L P F
Sbjct: 493 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 530
>AC006625-9|AAK68273.1| 669|Caenorhabditis elegans Glycosylation
related protein 2 protein.
Length = 669
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +3
Query: 189 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 293
NPY++ +G PH +D FN + L++ +K AI+ L P F
Sbjct: 493 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 530
>AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical
protein T24E12.1 protein.
Length = 507
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 415 CRHSVGRTT*DLTPTVSIGTLGLANAASSIVTLTF--SPLGNSNSDGNRSAIANFKPSSS 242
CRH+ R L TV T L + + L SP+ N + S I++ PSSS
Sbjct: 45 CRHTQARRIFSLEATVRAQTQELKQLKAEVQALRQPNSPVSKVNMNSPESGISSSSPSSS 104
Query: 241 I*LNES 224
L +S
Sbjct: 105 TCLEKS 110
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 731 STLRHLRS--DQHEQCSTFPNEWHVQXDVLVPKDDVLRS 841
ST LRS DQH + N+W + D + ++D+L+S
Sbjct: 1311 STQNRLRSLEDQHSTLQSDANKWRGELDAALRENDILKS 1349
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 731 STLRHLRS--DQHEQCSTFPNEWHVQXDVLVPKDDVLRS 841
ST LRS DQH + N+W + D + ++D+L+S
Sbjct: 1384 STQNRLRSLEDQHSTLQSDANKWRGELDAALRENDILKS 1422
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 731 STLRHLRS--DQHEQCSTFPNEWHVQXDVLVPKDDVLRS 841
ST LRS DQH + N+W + D + ++D+L+S
Sbjct: 1384 STQNRLRSLEDQHSTLQSDANKWRGELDAALRENDILKS 1422
>AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical
protein F07B7.14 protein.
Length = 401
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 392 HLRFNPYCIHRNIGFSECCFIDCHFDLF 309
HL FNPY H+ I F+ C + +F++F
Sbjct: 144 HLNFNPYKSHKTIYFTFFC--NFYFEMF 169
>AC006697-1|AAF60390.2| 278|Caenorhabditis elegans Hypothetical
protein W09B7.3 protein.
Length = 278
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 392 HLRFNPYCIHRNIGFSECCFIDCHFDLF 309
HL FNPY H+ I F+ C + +F++F
Sbjct: 21 HLNFNPYKSHKTIYFTFFC--NFYFEMF 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,892,742
Number of Sequences: 27780
Number of extensions: 417174
Number of successful extensions: 1014
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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