Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L20
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0658 + 19275129-19275363,19275453-19275544,19276440-192765... 192 3e-49
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 190 1e-48
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 189 2e-48
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 121 6e-28
03_04_0085 - 17182662-17182963,17183044-17183101,17183564-171836... 31 0.77
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 31 1.3
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693... 31 1.3
08_01_0843 - 8276619-8278991 29 3.1
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 7.1
>09_04_0658 +
19275129-19275363,19275453-19275544,19276440-19276509,
19276617-19276735,19277026-19277122,19277229-19277308,
19277443-19277637,19277727-19277810,19277931-19277991,
19278682-19278742,19279162-19279255,19279357-19279429,
19279834-19279916,19280008-19280154
Length = 496
Score = 192 bits (468), Expect = 3e-49
Identities = 94/200 (47%), Positives = 133/200 (66%), Gaps = 9/200 (4%)
Frame = +1
Query: 178 IKELQTILRDKNTSRSDFKFYADRLIRLVIEESLNKLPYTECEVVTPTGAIYKGLKYGAG 357
I+ + T++RD++ + DF FY+DRLIRLV+E L LP+TE +++TPTG+IY G+++
Sbjct: 297 IRGMHTLIRDRDITTPDFVFYSDRLIRLVVEHGLGHLPFTEKQIITPTGSIYMGVEFCKK 356
Query: 358 NCGVSIVRSGEAMEQGLRDCCRSIRIGKILVESDTDTHEAHVVYAKFPEDIARRQVLLMY 537
CGVSIVRSGE+ME LR CC+ I+IGKIL+ D + ++Y K P DIA R VLL+
Sbjct: 357 LCGVSIVRSGESMENALRACCKGIKIGKILIHRVGDNGQ-QLIYHKLPMDIAERHVLLLD 415
Query: 538 PIMSTGNTVKQAVNVLKQHGVKEERIILSNLFCTPAAVQAVVDHVPKMKILTSEL----- 702
P++ TGN+ QA+ +L + GV EERII NL P +Q V P++KI+TSE+
Sbjct: 416 PVLGTGNSANQAIELLIRKGVPEERIIFLNLISAPEGIQCVCKRFPRLKIVTSEIDTGLS 475
Query: 703 --HPVAP--NHFGQKYFGTD 750
+ V P +G +YFGTD
Sbjct: 476 EEYRVIPGLGEYGDRYFGTD 495
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 190 bits (463), Expect = 1e-48
Identities = 94/213 (44%), Positives = 137/213 (64%), Gaps = 9/213 (4%)
Frame = +1
Query: 148 SLTLLPSNDNIKELQTILRDKNTSRSDFKFYADRLIRLVIEESLNKLPYTECEVVTPTGA 327
+L ++ + I+ + TI+RD T+ DF FYADRLIRLV+E L LP+ E +V+TPTG+
Sbjct: 262 NLYVIQTTYQIRGMHTIIRDAATTTHDFIFYADRLIRLVVEHGLGHLPFKEKQVITPTGS 321
Query: 328 IYKGLKYGAGNCGVSIVRSGEAMEQGLRDCCRSIRIGKILVESDTDTHEAHVVYAKFPED 507
+Y G+++ CG+S++RSGE+ME LR CC+ I+IGKIL+ + D + ++Y P+D
Sbjct: 322 VYTGVEFSKRLCGISVIRSGESMENALRACCKGIKIGKILIHREGDNGK-QLIYHNLPKD 380
Query: 508 IARRQVLLMYPIMSTGNTVKQAVNVLKQHGVKEERIILSNLFCTPAAVQAVVDHVPKMKI 687
IA R VLL+ PI+ TGN+ QA+++L + GV+E II NL P V V P++KI
Sbjct: 381 IANRHVLLLDPILGTGNSAVQAISLLLKKGVQETNIIFLNLISAPQGVHVVSKRFPRVKI 440
Query: 688 LTSELH-------PVAP--NHFGQKYFGTD*YE 759
+TSE+ V P FG +YFGTD Y+
Sbjct: 441 VTSEIEFGLNDDFRVIPGMGEFGDRYFGTDDYQ 473
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 189 bits (461), Expect = 2e-48
Identities = 94/213 (44%), Positives = 137/213 (64%), Gaps = 9/213 (4%)
Frame = +1
Query: 148 SLTLLPSNDNIKELQTILRDKNTSRSDFKFYADRLIRLVIEESLNKLPYTECEVVTPTGA 327
+L ++ + I+ + TI+RD T+ DF FYADRLIRLV+E L LP+ E +V+TPTG+
Sbjct: 287 NLYVIQTTYQIRGMHTIIRDAATTTHDFIFYADRLIRLVVEHGLGHLPFKEKQVITPTGS 346
Query: 328 IYKGLKYGAGNCGVSIVRSGEAMEQGLRDCCRSIRIGKILVESDTDTHEAHVVYAKFPED 507
+Y G+++ CG+S++RSGE+ME LR CC+ I+IGKIL+ + D + ++Y P+D
Sbjct: 347 VYTGVEFSKRLCGISVIRSGESMENALRACCKGIKIGKILIHREGDNGK-QLIYHNVPKD 405
Query: 508 IARRQVLLMYPIMSTGNTVKQAVNVLKQHGVKEERIILSNLFCTPAAVQAVVDHVPKMKI 687
IA R VLL+ PI+ TGN+ QA+++L + GV+E II NL P V V P++KI
Sbjct: 406 IANRHVLLLDPILGTGNSAVQAISLLLKKGVQETNIIFLNLISAPQGVHVVSKRFPRVKI 465
Query: 688 LTSEL-------HPVAP--NHFGQKYFGTD*YE 759
+TSE+ V P FG +YFGTD Y+
Sbjct: 466 VTSEIDFGLNDDFRVIPGMGEFGDRYFGTDDYQ 498
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 121 bits (292), Expect = 6e-28
Identities = 72/182 (39%), Positives = 104/182 (57%), Gaps = 19/182 (10%)
Frame = +1
Query: 262 VIEESLNKLPYTECEVVTPTGAIYKGLKYGAGNCGVSIVRSGEAMEQGLRDCCRSIRIGK 441
V+E L LP+TE ++VTPTG+ Y G+ + CGVSI+RSGE+ME LR CC+ I+IGK
Sbjct: 289 VVEHGLGHLPFTEKQIVTPTGSTYMGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGK 348
Query: 442 ILVESDTDTHEAHVVYAKFPEDIARRQVLLMYPIMSTGNT----VKQAVNVLKQHGVKEE 609
IL+ D D + ++Y KFP DIA R VLLM P++ TG+ +V G++
Sbjct: 349 ILIHRDGDNGQ-QLIYHKFPLDIAERHVLLMDPVLGTGSVEFIQCSFHSDVCLLVGMRTT 407
Query: 610 RI---ILSNLFCT---PAAVQAVVDHVPKMKILTSEL-------HPVAP--NHFGQKYFG 744
+ + + + T P V V P++KI+TSE+ + V P +G +YFG
Sbjct: 408 EVTAKVSYHNYSTVQAPEGVHCVCKRFPRLKIVTSEIETGLNEEYRVIPGLGEYGDRYFG 467
Query: 745 TD 750
TD
Sbjct: 468 TD 469
>03_04_0085 -
17182662-17182963,17183044-17183101,17183564-17183638,
17183730-17183864,17183986-17184165,17184315-17184365,
17184537-17184637,17185562-17185620,17185701-17185816,
17186668-17186853,17187337-17187399,17187440-17187521,
17188221-17188312,17189153-17189296,17190056-17190136,
17190815-17190898,17191465-17191566,17191922-17192017,
17192239-17192299,17192418-17192521
Length = 723
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 91 IDQDIRQWDADDVKEQFGDSLTLLPSNDNIKELQTILRDKNTSRSDFK 234
++ +IRQ + D +++ G+S L+ +D I++ IL T + F+
Sbjct: 74 VENNIRQIELDSIQDYIGESENLVSLHDQIRDCDNILSQMETVLTGFQ 121
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 352 AGNCGVSIVRSGEAMEQGLRDCCRSIRIGKILVESDTDTHEAHV 483
AGN GVS +RS E + GL R++R+G + +D+ A V
Sbjct: 1200 AGNLGVSAIRSDERV--GLAGDARNLRLGTSMPNLSSDSASAQV 1241
>01_06_0393 +
28968873-28968918,28969048-28969084,28969165-28969384,
28969557-28969715,28969831-28969950,28972154-28972240,
28972329-28972418,28972516-28972602,28972761-28972877,
28972945-28973028,28973585-28975324,28975670-28975816,
28975998-28976431,28976523-28976667
Length = 1170
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 582 YIYSLFNCISCRHY---WVHEQHLSSCNVFWKLRIYNMSFMCISITFY*D 442
Y++SL NC+ C Y WV + L V ++ ++++C+ I FY D
Sbjct: 48 YLFSLLNCLICLWYGLPWVADGRLLVATVNGIGAVFQLAYICLFI-FYAD 96
>08_01_0843 - 8276619-8278991
Length = 790
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 322 GAIYKGLKYGAGNCGVSIVRSGEAMEQGLRDCCRSIR 432
G ++KG+ +GN G+++ R E G R+ R +R
Sbjct: 514 GTVFKGVLTNSGNKGIAVKRLERMAEDGEREFQREVR 550
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -3
Query: 733 SVRNDLGPQDAAPK---LIFSFWVRDRLQLVPL 644
SV +DLG DAAPK L +W+++ + +PL
Sbjct: 3317 SVEHDLGASDAAPKTLRLFVPYWIKN-ISSIPL 3348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,129,245
Number of Sequences: 37544
Number of extensions: 412060
Number of successful extensions: 984
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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