Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L15
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1181 - 24985963-24986242,24987109-24987197                      118   4e-27
06_02_0140 + 12255418-12255512,12257514-12257793                      118   4e-27
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    101   5e-22
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   9.3  

>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  118 bits (283), Expect = 4e-27
 Identities = 56/101 (55%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
 Frame = +2

Query: 107 YTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXX 286
           YT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+R+VP   
Sbjct: 19  YTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRV 78

Query: 287 XXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 403
                   ND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 79  RVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  118 bits (283), Expect = 4e-27
 Identities = 56/101 (55%), Positives = 72/101 (71%), Gaps = 2/101 (1%)
 Frame = +2

Query: 107 YTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXX 286
           YT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+R+VP   
Sbjct: 21  YTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRV 80

Query: 287 XXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 403
                   ND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 81  RVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  101 bits (241), Expect = 5e-22
 Identities = 54/117 (46%), Positives = 72/117 (61%), Gaps = 18/117 (15%)
 Frame = +2

Query: 107 YTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 238
           YT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT DIR+D +L
Sbjct: 20  YTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKL 79

Query: 239 NKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 403
           NK +W+ G+R+VP           ND+ED+  +L++LVT   +P   +KGL T+ V+
Sbjct: 80  NKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 113 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 217
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,070,880
Number of Sequences: 37544
Number of extensions: 203776
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)