Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L14
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       31   0.14 
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    29   0.96 

>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 486 RVQHDSVGVPFFQELVQVGVDGRFL 412
           RVQ D++ + F++EL+  G +G+FL
Sbjct: 111 RVQSDTIALQFYEELIAEGFEGKFL 135


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 585 LRSQHLNGPLIYVNPVWLFIGPGLRYGTAAATPRVQHDSVGVPFF 451
           LR+ H NG   +   ++L IG GL YG +   PR    ++GV  F
Sbjct: 78  LRAFHANGASFFFIFLYLHIGRGLYYG-SYKYPRTMTWNIGVIIF 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,022
Number of Sequences: 5004
Number of extensions: 55122
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)