Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L14
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    62   4e-10
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510...    29   4.0  
09_06_0231 + 21733151-21734905                                         28   7.1  
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98...    28   9.3  
04_04_0763 - 27854600-27854668,27854766-27855140,27855227-278559...    28   9.3  

>03_01_0307 +
           2414709-2414762,2415769-2415841,2416090-2416154,
           2416288-2416365,2416880-2416999,2418021-2418091,
           2418808-2418900,2419242-2419311,2420236-2420436,
           2421345-2421557,2422354-2422440,2422441-2422652,
           2422901-2423042,2423424-2423592,2424050-2424126,
           2424393-2424563,2425095-2425171,2425299-2425401,
           2426066-2426185,2426301-2426444,2426826-2426975,
           2427398-2427541,2427816-2427903,2428672-2428799,
           2429329-2429533,2429843-2430015,2430174-2430392,
           2430490-2430684
          Length = 1213

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
 Frame = +1

Query: 271 VDVLDELTLPDEQPCIEAAPCSILYQANFDTNFEDRNGFITGIAKYIEEATVHAN-LNEL 447
           +  L   +L DEQP ++     +L    + TN       +      + E T   N LN L
Sbjct: 9   IAALSTFSLEDEQPDVQGLAV-LLSSERYATNSPIEYSDVAAYRLSLGEDTKAINQLNTL 67

Query: 448 LEEGNAHAVMLYTWRCCSRAIPQPRSNEQPDRVHIYERTVQVLAPEVDKLLQFMYFQRKA 627
           ++EG   A +LYT+R C +A+PQ   + +  +  +Y  T QVL  E+ +L +   +Q  A
Sbjct: 68  IQEGKEMASLLYTYRSCVKALPQLPDSMKHSQADLYLETYQVLDLEMSRLREIQRWQASA 127

Query: 628 IERFCAEVRRLCHAEK 675
             +  A+++R    E+
Sbjct: 128 ASKLAADMQRFSRPER 143


>07_03_1757 +
           29250163-29250349,29250612-29250813,29250898-29251008,
           29251112-29251160,29251247-29251353,29251439-29251942,
           29252486-29252614,29252865-29253161,29253274-29253720,
           29253828-29253893,29254109-29254169,29254314-29254463,
           29254555-29254689,29254791-29254818,29255430-29255479
          Length = 840

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 417 SDRPRQLERAPGRRERPRCHAVHVALLQPC 506
           S RP  L   P  R R   HA H+ALL  C
Sbjct: 16  SPRPPLLRLLPQPRRRRHAHAKHIALLTNC 45


>09_06_0231 + 21733151-21734905
          Length = 584

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -2

Query: 537 WLFIG--PGLRYGTAAATPRVQHDSVGVPFFQELVQVGVDGRFLYVLCDTGDETIAVFKV 364
           WLF+    G  +G  AA   V    V    ++ +   G+ GRFL+ +   GDE   V   
Sbjct: 186 WLFLFGVEGDGWGATAAATAVHALDVDAQRWRRVGADGLRGRFLFSVAGVGDELYVVGGR 245

Query: 363 SIEISLIQDRT 331
           S +   ++ +T
Sbjct: 246 SGDAGSVKTKT 256


>10_01_0076 -
           987092-987671,987747-987812,988201-988363,988467-988548,
           989153-989202,989237-989270,990177-990239,990339-990403,
           990485-990560,991274-991353,991514-991628,991729-991830
          Length = 491

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 387 HHRYRKVHRGSDRPRQLERAPGRRERPRCH 476
           H R+R+  RG DR R  ERA   R+R   H
Sbjct: 387 HDRHRE--RGRDRERDYERASHERDRGHMH 414


>04_04_0763 -
           27854600-27854668,27854766-27855140,27855227-27855901,
           27857181-27857219,27859019-27859075,27859629-27859725,
           27859978-27860232,27862801-27862937
          Length = 567

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 455 SSRSSFKLAWTVASSMYFAIPVMKPLRSSKLVSKL 351
           +S+ S  +AW  A S   A+PV+  + S KL+ K+
Sbjct: 333 NSQVSCFMAWKSAKSNEMAVPVVTGIESQKLLKKV 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,643,421
Number of Sequences: 37544
Number of extensions: 375255
Number of successful extensions: 1091
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)