Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L14
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)                    131   5e-31
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)                    30   2.4  
SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)                29   5.5  
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)                    28   7.2  
SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)               28   9.5  
SB_8485| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                  28   9.5  
SB_54852| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                 28   9.5  
SB_34744| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                 28   9.5  
SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)                    28   9.5  

>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
          Length = 875

 Score =  131 bits (317), Expect = 5e-31
 Identities = 57/93 (61%), Positives = 74/93 (79%)
 Frame = +1

Query: 442 ELLEEGNAHAVMLYTWRCCSRAIPQPRSNEQPDRVHIYERTVQVLAPEVDKLLQFMYFQR 621
           ELLEEG  +AV+LYTWR CSRA+P  +S++QP+RV IYE+TV+VL PE++KL  FM+F  
Sbjct: 25  ELLEEGEKYAVVLYTWRSCSRAVPSVKSDDQPNRVEIYEKTVEVLEPEINKLKGFMHFAM 84

Query: 622 KAIERFCAEVRRLCHAEKRRDFVSEAYLLTLGK 720
             + RFC EV+ L H E+R+DF+SE YLLTLGK
Sbjct: 85  TVVTRFCQEVKTLSHPERRKDFISERYLLTLGK 117


>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
          Length = 521

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +1

Query: 397 IAKYIEEATVHANLNELLEEGNAHAVMLYTWRCCSRAIPQPRSNEQPDRVHIYERTVQVL 576
           I K +E   V  N N L    N + ++  T   C   I   RS  +P+R H+++++ +V 
Sbjct: 27  IIKALERLIVE-NTNSLNSRINKYFIINLTTGRCFAYITNRRSRCRPNRFHVHKQSAKVN 85

Query: 577 APEVD 591
             ++D
Sbjct: 86  VGKID 90


>SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)
          Length = 67

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/54 (18%), Positives = 31/54 (57%)
 Frame = +1

Query: 25  VRQEIKTLILRQTTRILH*KRIIYKNEQ*LIIPYILCIINYYYRIDKTQFICAC 186
           +R+ + + ++  + R+LH +R +  +++  ++ + +C+ + + R D+    C C
Sbjct: 4   LRRHLVSYLMVSSHRLLHRQRYVTHDKRKALLSFTVCLCSTHLRSDRLCVHCPC 57


>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
          Length = 189

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 390 HRYRKVHRGSDRPRQL-ERAPGRRERPRCHAVHVALLQPCHTSAQVQ*TTRPGSHI*EDR 566
           HR + ++   DR R L    PG ++  +   VH+A L   H +  +Q T +P S    D 
Sbjct: 73  HRVQVLNAYIDRLRHLIPLFPGEKKPSKTETVHLAALYIEHMTEIIQNTEKPPSV--SDA 130

Query: 567 SSAGS 581
           SS G+
Sbjct: 131 SSPGT 135


>SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +1

Query: 490 RCCSRAIPQPRSNEQ 534
           RCC+R +PQP++++Q
Sbjct: 154 RCCTRKLPQPQAHQQ 168


>SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)
          Length = 882

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -2

Query: 759 CXSARRGPRTCSRLAEGQEVG--FGDEVPPLLRVAESTHFSTEPFYGLALEIHELQELIN 586
           C  A+RG   C       +    +GD   P + + + T F     Y   L + E +EL+N
Sbjct: 433 CDPAKRGNGQCDPECNRHDHAWDYGDCCDPSITLTDKTCFDPTSLYRAYLSLKEYKELLN 492


>SB_8485| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 257

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +1

Query: 490 RCCSRAIPQPRSNEQ 534
           RCC+R +PQP++++Q
Sbjct: 241 RCCTRKLPQPQAHQQ 255


>SB_54852| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 296

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +1

Query: 490 RCCSRAIPQPRSNEQ 534
           RCC+R +PQP++++Q
Sbjct: 241 RCCTRKLPQPQAHQQ 255


>SB_34744| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 296

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +1

Query: 490 RCCSRAIPQPRSNEQ 534
           RCC+R +PQP++++Q
Sbjct: 241 RCCTRKLPQPQAHQQ 255


>SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)
          Length = 1358

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +1

Query: 490 RCCSRAIPQPRSNEQ 534
           RCC+R +PQP++++Q
Sbjct: 345 RCCTRKLPQPQAHQQ 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,749,819
Number of Sequences: 59808
Number of extensions: 434689
Number of successful extensions: 1190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)