Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L14
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   1.8  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   2.3  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 487 WRCCSRAIPQPRSNE 531
           WR C R++PQ   N+
Sbjct: 28  WRICDRSLPQKEYNQ 42


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 568 QVLAPEVDKLLQFMYFQRKAIERFCAEVRRLCHAEKRRDFVSEAYLLTL 714
           +VL   V +L   M   RK    FCAE+     ++KR+  V  A  L++
Sbjct: 75  KVLVHNVKELEVLMMQNRK----FCAEIAHGGSSKKRKSIVERAQQLSI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,426
Number of Sequences: 438
Number of extensions: 4204
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)